New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5196165 | 47 (1.080) | 3 (0.070) | 3/238 | NT | 6.6% | coding (398/690 nt) | ybgJ | allophanate hydrolase subunit 1 |
? | NC_002947 | = 5196181 | 41 (1.010) | coding (382/690 nt) | ybgJ | allophanate hydrolase subunit 1 |
CGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTACCACACCGGGATCTCGTGTCGGCGGCCGCCACTGCCTGTGTCAG > NC_002947/5196032‑5196327 | cGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCaaa < 2:166504/150‑1 (MQ=255) tGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTAGCCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAAcaccgg > 1:1093446‑M2/1‑144 (MQ=255) tGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAAcaccgg > 1:786940‑M2/1‑144 (MQ=255) tGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAAcaccgg < 2:629150‑M2/150‑7 (MQ=255) tGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAAcaccgg > 2:921265‑M2/1‑144 (MQ=255) ggcCGGGTAGGCCGCCGTCTGGCGATCGGCACTACCTATGCTGGGCGTCGTCGCGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAAcaccgg > 2:737978‑M2/2‑144 (MQ=255) gTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATc < 2:481128/150‑1 (MQ=255) tAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATcg > 2:1025342/1‑150 (MQ=255) tAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGAAGAGGGCTGGACAGGCTCTCGTCGACCAGGCCCATAAAGCCGAAACCCGGTGCGAAGACCAGGGCAAACACCGGGTAATcg > 2:89465/1‑150 (MQ=255) ccgccgTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGtt < 2:817262/150‑1 (MQ=255) tCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCTCTTGCGTGGGGTACTCAGACGAGGCGGCGGCTCCCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGt < 1:860837/150‑1 (MQ=255) aaccgcTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACACAGGGAGAAGCCCAGGGCAGACAGCGGGTAATCGCGTTCACCGTGc > 1:587861/4‑150 (MQ=255) cgcTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAg < 2:247924/150‑1 (MQ=255) gcTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGc > 1:428020/1‑150 (MQ=255) ggCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAAc > 1:268954/1‑150 (MQ=255) aCCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAAtctc < 2:428020/150‑1 (MQ=255) cccACGCCGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGCAACGGCTCCTGAAGCCGAACCCTTTTGCGAAGCCCAGGGCAAACCCCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTcc < 1:688931/150‑1 (MQ=255) ccACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCTCGTTCACCGTGCAAGCGAACAATCTCCg > 1:233162/1‑150 (MQ=255) cACGCTTCCCGCCGCCACGCGCTTGCGTGGGGTACTCCGACGCGGGCGGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGc < 2:738559/150‑1 (MQ=255) cACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGc > 2:951761/1‑150 (MQ=255) cACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGc < 1:1056358/150‑1 (MQ=255) cACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGc < 1:774686/150‑1 (MQ=255) cGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAg < 2:576410/134‑1 (MQ=255) cGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAg > 1:576410/1‑134 (MQ=255) tGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCAc < 1:513623/150‑1 (MQ=255) ccgccgCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCCTGACGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCa > 2:186243/1‑150 (MQ=255) ccgccgCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCATGCAAGCGAACAATCTCCGCTTCACTcc > 2:135182/1‑149 (MQ=255) cgccgcCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACTCCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCaa < 1:869008/150‑1 (MQ=255) gCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGc < 2:268954/150‑1 (MQ=255) aGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGc > 2:61226/1‑150 (MQ=255) aGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCggg > 1:169873/1‑150 (MQ=255) aGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCggg < 1:1039422/150‑1 (MQ=255) gcTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGcgt > 2:890892/1‑150 (MQ=255) gtcgACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTa < 1:768485/150‑1 (MQ=255) gtcgACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTa < 2:477875/150‑1 (MQ=255) aGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGGAATCGCTTTCACCTTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTACCACAcc < 1:917910/150‑1 (MQ=255) ggCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTAAAGCCATTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTACCACACCg < 2:98369/150‑1 (MQ=255) cccATGAAGCCGAAACCCAGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCCCTCCAGCCGCTGCGGGCTGGACGCGCAGGCAGCTCGGGGCCGACACTGGCGTGGCACCACACCggg < 2:587861/150‑1 (MQ=255) ccATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTACCACACCGGGa > 2:732342/1‑150 (MQ=255) cATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAAcaccgggtttcggcttcatgggcctggtcgacgagcgcctggccagccctcgtctgagtaccccacgcaagcgcgtggcggcgggcagcgtgggtattgccgagcgccagacgg < 2:104741‑M2/150‑115 (MQ=255) gAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTACCACACCGGGAtctc < 2:934548/150‑1 (MQ=255) cGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTACCACACCGGGATCTCGTGTc > 1:698849/1‑150 (MQ=255) gAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTACCACACCGGGATCTCGTGTcg < 1:1025342/150‑1 (MQ=255) gAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTACCACACCGGGATCTCGTGTcg < 1:343259/150‑1 (MQ=255) cccGGTGCGAAGCCCAGGGCAAAcaccgggtttcggcttcatgggcctggtcgacgagcgcctggccagccctcgtctga < 2:20213‑M2/80‑58 (MQ=255) cccGGTGCGAAGCCCAGGGCAAAcaccgggtttcggcttcatgggcctggtcgacgagcgcctggccagccctcgtctga > 1:20213‑M2/1‑23 (MQ=255) cGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGc < 2:544416/107‑1 (MQ=255) cGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGc > 1:544416/1‑107 (MQ=255) aGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTACCACACCGGGATCTCGTGTCGGCGGCCGCCACTGc > 2:1128840/1‑150 (MQ=255) cccAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTACCACACCGGGATCTCGTGTCGGCGGCCGCCACTGCCt < 1:503574/150‑1 (MQ=255) cAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACTATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTACCACACCGGGATCTCGTGTCGGCGGCCGCCACTGCCtgt < 1:237558/150‑1 (MQ=255) cAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTACCACACCGGGa > 1:267918/1‑122 (MQ=255) cAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTACCACACCGGGa < 2:267918/122‑1 (MQ=255) cAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTACCACACCGGGATCTCGTGTCGGCGGCCGCCACTGCCTGTGTCAg < 2:169873/150‑1 (MQ=255) acacCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCg < 1:347923/42‑1 (MQ=255) acacCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCg > 2:347923/1‑42 (MQ=255) | CGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTACCACACCGGGATCTCGTGTCGGCGGCCGCCACTGCCTGTGTCAG > NC_002947/5196032‑5196327 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |