New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5241748	61 (1.410)	5 (0.120)	5/244	NT	8.4%	coding (172/633 nt)	hmgC	maleylacetoacetate isomerase
	?	NC_002947	= 5241781	51 (1.230)					coding (139/633 nt)	hmgC	maleylacetoacetate isomerase

TGCAGCGGATGAATGTCGCAACCAATGATGGCCGCCACCCCCCGAACCCTGGCCCGTGCCTCGGCGGTGGCCGGCAGCAACGCAGGCTGTGGATAAACCTCTTCCAGGTACTCGATGATCGCCGGCGACTGCACCAGCACCTCACCACCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5241597‑5241748 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgtcAACCCGCAGGGCCGCGTACCGGCCTTGCGCACCGACGGTGGTGAGGTGCTGGTGCAGTCGCCGGCGATCATCGAGTACCTGGAAGAGGTTTATCCACAGCCTGCGTTGCTGCCGGCCACCGCCGAGGCACGGGCCAGGGTTCGGGG  <  NC_002947/5241781‑5241636                                                                                                                                                                                                                                                                                                            TGCAGCGGATGAATGTCGCAACCAATGATGGCCGCCACCCCCCGAACCCTGGCCCGTGCCTCGGCGGTGGCCGGCAGCAACGCAGGCTGTGGATAAACCTCTTCCAGGTACTCGATGATCGCCGGCGACTGCACCAGCACCTCACCACCG                                                                                                                                                      >  1:542538/1‑150                                  GCCACCCCCCGAACCCTGGCCCGTGCCTCGGCGGTGGCCGGCAGCAACGCAGGCTGTGGATAAACCTCTTCCAGGTACTCGATGATCGCCGGCGACTGCACCAGCACCTCACCACCGTCGGTGCGCAGGGCCGCGTACCGGCCTTGCGCA                                                                                                                     <  1:420213/150‑1                                   CCACCCCCCGAACCCTGGCCCGTGCCTCGGCGGTGGCCGGCAGCAACGCAGGCTGTGGATAAACCTCTTCCAGGTACTCGATGATCGCCGGCGACTGCACCAGCACCTCACCACCGTCGGTGCGCAGGGCCGCGTACCGGCCTTGCGCAC                                                                                                                    <  2:538836/150‑1                                                 CTGGCCCGTGCCTCGGCGGTGGCCGGCAGCAACGCAGGCTGTGGATAAACCTCTTCCAGGTACTCGATGATCGCCGGCGACTGCACCAGCACCTCACCACCGTCAACCCGCAGGGCCGCGTACCGGCCTTGCGCACCGACGGTGGTNAGG                                                                                                      <  2:700459/150‑1                                                      CCGTGCCTCGGCGGTGGCCGGCAGCAACGCAGGCTGTGGATAAACCTCTTCCAGGTACTCGATGATCGCCGGCGACTGCACCAGCACCTCACCACCGTCAACCCGCAGGGCCGCGTACCGGCCTTGCGCACCGACGGTGGTGAGGT                                                                                                     <  1:540184/146‑1                                                      CCGTGCCTCGGCGGTGGCCGGCAGCAACGCAGGCTGTGGATAAACCTCTTCCAGGTACTCGATGATCGCCGGCGACTGCACCAGCACCTCACCACCGTCAACCCGCAGGGCCGCGTACCGGCCTTGCGCACCGACGGTGGTGAGGT                                                                                                     >  2:540184/1‑146                                                                                                                                                     CGTCAACCCGCAGGGCCGCGTACCGGCCTTGCGCACCGACGGTGGTGAGGTGCTGGTGCAGTCGCCGGCGATCATCGAGTACCTGGGAGAGGTTTATCCACAGCCTGCGTTGCTGCCGGCCACCGCCGAGGCACGGGCCAGGGTTCGGGa  <  2:461259/150‑2                                                                                                                                                                                                                                                                                                            TGCAGCGGATGAATGTCGCAACCAATGATGGCCGCCACCCCCCGAACCCTGGCCCGTGCCTCGGCGGTGGCCGGCAGCAACGCAGGCTGTGGATAAACCTCTTCCAGGTACTCGATGATCGCCGGCGACTGCACCAGCACCTCACCACCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5241597‑5241748 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgtcAACCCGCAGGGCCGCGTACCGGCCTTGCGCACCGACGGTGGTGAGGTGCTGGTGCAGTCGCCGGCGATCATCGAGTACCTGGAAGAGGTTTATCCACAGCCTGCGTTGCTGCCGGCCACCGCCGAGGCACGGGCCAGGGTTCGGGG  <  NC_002947/5241781‑5241636

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.