New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5779815 =	31 (0.720)	3 (0.070)	3/244	NT	8.6%	coding (63/1794 nt)	cvrA	K(+)/H(+) antiporter NhaP
	?	NC_002947	5779855 =	34 (0.820)					coding (103/1794 nt)	cvrA	K(+)/H(+) antiporter NhaP

TTGAAGATGATGCCGCCACCATCGACACCGGCGAGCATGCCGACGGCGAGGATGATGACCAGAATAGGGATACCCAGGCGCGACGACAGCGAGCTGACCAGGATACTTGCACCCACCAGCAATGCGCCGATCAGGAACAGGCTGTTGATGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5779967‑5779815 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtgGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCTCGCCGTCGGCATGCTCGCCGGTGTCGATGGTGGCGGCA  >  NC_002947/5779855‑5779957                                                                                                                                                                                                                                                                  TTGAAGATGATGCCGCCACCATCGACACCGGCGAGCATGCCGACGGCGAGGATGATGACCAGAATAGGGATACCCAGGCGCGACGACAGCGAGCTGACCAGGATACTTGCACCCACCAGCAATGCGCCGATCAGGAACAGGCTGTTGATG                                                                                                            <  2:940209/150‑1                                                                                                           TTGCACCCACCAGCAATGCGCCGATCAGGAACAGGCTGTTGATGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCTCGCCGTCGGCATGCTCGCCGGTGTCGATGGTGGCGGCA  >  1:43367/1‑150                                                                                                                 CCACCAGCAATGCGCCGATCAGGAACAGGCTGTTGATGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCTCGCCGTCGGCATGCTCGCCGGTGT                <  1:343348/130‑1                                                                                                                 CCACCAGCAATGCGCCGATCAGGAACAGGCTGTTGATGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCTCGCCGTCGGCATGCTCGCCGGTGT                >  2:343348/1‑130                                                                                                                                                                                                                                                                  TTGAAGATGATGCCGCCACCATCGACACCGGCGAGCATGCCGACGGCGAGGATGATGACCAGAATAGGGATACCCAGGCGCGACGACAGCGAGCTGACCAGGATACTTGCACCCACCAGCAATGCGCCGATCAGGAACAGGCTGTTGATGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5779967‑5779815 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtgGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCTCGCCGTCGGCATGCTCGCCGGTGTCGATGGTGGCGGCA  >  NC_002947/5779855‑5779957

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.