New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5802257	40 (0.920)	4 (0.100)	4/240	NT	8.7%	coding (633/1239 nt)	pilQ	type IV pili biogenesis protein
	?	NC_002947	= 5802273	46 (1.120)					coding (617/1239 nt)	pilQ	type IV pili biogenesis protein

CACCTTGGGCTGCGAAATGATTTCGCCGTTGCCGCTTTTTTCCATGGCACTGAGCTCCAGGTCCAGCAGCACGTCACCGCGCAACAAACCCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5802104‑5802257 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccgcTGTACGGCGAGAAACTGCGGCCCGGCAAGGAGCTGTTCGTCGACCTCGGTCTGGAGCGTGCCGGCAGCAGTATCGGCCTGGGTTTGTTGCGCGGTGACGTGCTGCTGGACCTGGAGCTCAGTGCCATGGAAAAAAGCGGCAACGGC  <  NC_002947/5802273‑5802128                                                                                                                                                                                                                                                                                                              CACCTTGGGCTGCGAAATGATTTCGCCGTTGCCGCTTTTTTCCATGGCACTGAGCTCCAGGTCCAGCAGCACGTCACCGCGCAACAAACCCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGG                                                                                                                                                        <  1:183479/150‑1  ACCTTGGGCTGCGAAATGATTTCGCCGTTGCCGCTTGTTTCCATGGCACTGAGCTCCAGGTCCAGCAGCACGTCCCCGCGCACCCAACCCAGGCCAATACTGCTGCCGGCACGCTCCATACCGAGTTCTACGAACATCTCCTTGCCGGGC                                                                                                                                                       <  2:852283/150‑1         GCTGCGAAATGATTTCGCCGTTGCCGCTTTTTTCCATGGCACTGAGCTCCAGGTCCAGCAGCACGTCACCGCGCAACAAACCCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCTGTA                                                                                                                                                >  1:451757/1‑150                                                                                     CAAACCCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCTGTACGGCGAGAAACTGCGGCCC                                                                                                                             <  1:178644/93‑1                                                                                     CAAACCCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCTGTACGGCGAGAAACTGCGGCCC                                                                                                                             >  2:178644/1‑93                                                                                                                                  GACGAACAGCTCCTTGCCGGGCCGCTGTACGGCGAGAAACTGCG                                                                                                                                 <  1:821254/44‑1                                                                                                                                  GACGAACAGCTCCTTGCCGGGCCGCTGTACGGCGAGAAACTGCG                                                                                                                                 >  2:821254/1‑44                                                                                                                                                       CCGCTGTACGGCGAGAAACTGCGGCCCGGCAAGGAGCTGTTCGTCGACCTCGGTCTGGAGCGTGCCGGCAGCAGTATCGGCCTGGGTTTGTTGCGCGGTGACGTGCTGCTGGACCTGGAGCTCAGTGCCATGGAAAAAAGCGGCAACGGC  >  2:393296/1‑150                                                                                                                                                                                                                                                                                                              CACCTTGGGCTGCGAAATGATTTCGCCGTTGCCGCTTTTTTCCATGGCACTGAGCTCCAGGTCCAGCAGCACGTCACCGCGCAACAAACCCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5802104‑5802257 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccgcTGTACGGCGAGAAACTGCGGCCCGGCAAGGAGCTGTTCGTCGACCTCGGTCTGGAGCGTGCCGGCAGCAGTATCGGCCTGGGTTTGTTGCGCGGTGACGTGCTGCTGGACCTGGAGCTCAGTGCCATGGAAAAAAGCGGCAACGGC  <  NC_002947/5802273‑5802128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.