| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5802257 | 40 (0.920) | 4 (0.100) | 4/240 | NT | 8.7% | coding (633/1239 nt) | pilQ | type IV pili biogenesis protein |
| ? | NC_002947 | = 5802273 | 46 (1.120) | coding (617/1239 nt) | pilQ | type IV pili biogenesis protein | |||||
GCCGTTGCCGCTTTTTTCCATGGCACTGAGCTCCAGGTCCAGCAGCACGTCACCGCGCAACAAAC‑CCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACC > NC_002947/5802128‑5802422 | gCCGTTGCCGCTTTTTTCCATGGCACTGAGCTCCAGGTCCAGCAGCACGTCACCGCGCAACAAAC‑CCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAgcgg > 2:393296‑M2/1‑146 (MQ=255) gCTTTTTTCCATGGCACTGAGCTCCAGGTCCAGCAGCACGTCACCGCGCAACAAAC‑CCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCa < 1:974526/150‑1 (MQ=255) tGGCACTGAGCTCCAGGTCCAGCAGCACGTCACCGCGCAACAAAC‑CCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCa > 2:242070/1‑150 (MQ=255) ggCACTGAGCTCCAGGTCCAGCAGCACGTCACCGCGCAACAAAC‑CCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAg < 1:693282/150‑1 (MQ=255) aCTGAGCTCCAGGTCCAGCAGCACGTCACCGCGCAACAAAC‑CCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCt > 1:1103253/1‑150 (MQ=255) tGAGCTCCAGGTCCAGCAGCACGTCACCGCGCAACAAAC‑CCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCttt > 1:1092045/1‑150 (MQ=255) tCCAGGTCCAGCAGCACGTCACCGCGCAACAAAC‑CCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCa > 1:226169/1‑150 (MQ=255) tCCAGGTCCAGCAGCACGTCACCGCGCAACAAAC‑CCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCAGTTCCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCa < 1:687276/150‑1 (MQ=255) aGGTCCAGCAGCACGTCCCCGCG‑ACCGGCCTCCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACCGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATaa < 1:550300/150‑1 (MQ=255) gTCCAGCAGCACGTCACCGCGCAACAAAC‑CCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGACTTATGTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATc < 2:942563/150‑1 (MQ=255) cagcaCGCCACCGCGCAACAAAC‑CCGGGCCGAGACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACCGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGtt < 2:534148/150‑1 (MQ=255) agcaCGTCACCGCGCAACAAGC‑CCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTg < 2:1103253/150‑1 (MQ=255) caCGTCACCGCGCAACAAAC‑CCAGGCCGATACTGCCGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGc < 2:855576/150‑1 (MQ=255) aCGTCACCGCGCAACAAAC‑CCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGcc < 1:1120033/150‑1 (MQ=255) cACCGCGCAACAAAC‑CCCGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAACTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTcga < 1:530090/150‑1 (MQ=255) aCCGCGCAACAAAC‑CCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCtt < 1:843864/124‑1 (MQ=255) aCCGCGCAACAAAC‑CCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCtt > 2:843864/1‑124 (MQ=255) aCCGCGCAACAAAC‑CCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTcgac < 2:226169/150‑1 (MQ=255) ccGCGCAACAAAC‑CCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTcgacg > 1:145166/1‑150 (MQ=255) cgcAACAAAC‑CCAGGCCGATACTGCTGCCGGCACGCTCCAGCCCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATa < 2:145166/150‑1 (MQ=255) acaaAC‑CCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATAcgcg > 1:100505/1‑150 (MQ=255) acaaAC‑CCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATAcgcg > 2:352469/1‑150 (MQ=255) ccAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGa > 2:854212/1‑150 (MQ=255) ccAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGa > 1:250239/1‑150 (MQ=255) ccAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTAAAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGa > 1:859930/1‑150 (MQ=255) aGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACCGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGTCTCGACGATACGCGCCTCGATc > 1:503340/1‑150 (MQ=255) gCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGc > 2:766300/1‑150 (MQ=255) tgctgcCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGAGCCTCGATCGCTACCTGgc > 1:288801/1‑150 (MQ=255) ccGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCAcc < 2:863691/150‑1 (MQ=255) ccGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACACCAGACCATCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCAcc < 2:1062061/150‑1 (MQ=255) gCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGc > 2:350753/1‑150 (MQ=255) tCGACGAACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGCCGATACGCGCCTCGATCGCTCCCTGGCGCACCGGCACATCCAACTGTGccccc > 1:127462/1‑150 (MQ=255) gaACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGcaca > 1:979660/1‑130 (MQ=255) gaACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGcaca < 2:979660/130‑1 (MQ=255) cTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCAGCTGGTGGCGCag < 1:327884/150‑2 (MQ=255) cTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGACTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCAt < 1:79692/150‑1 (MQ=255) cTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCAtctc > 2:286789/1‑150 (MQ=255) cTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCA‑CCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCg > 1:1123582/1‑150 (MQ=255) ttGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCg < 2:993251/150‑1 (MQ=255) gCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGc < 1:854212/150‑1 (MQ=255) gggCCGCAGTTTCTCGCCGTACAgcggcccggcaaggagctgttcgtcgacctcggtctggagcgtgccggcagcagtatcggcctgggtttg > 2:178644‑M2/1‑23 (MQ=255) gggCCGCAGTTTCTCGCCGTACAgcggcccggcaaggagctgttcgtcgacctcggtctggagcgtgccggcagcagtatcggcctgggtttg < 1:178644‑M2/93‑71 (MQ=255) gCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGc < 1:242070/150‑1 (MQ=255) gCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGAGCTCCCGCAAGCCAAAGTGATGTTTGACGTTGGCCGCGTCGATACGCGCCTCGATCGCTACCTGCCGCCCCGGCACCCCCAACTCCGCCACCAGCTGCCGCATCTCGGCCAGGc < 2:1092045/150‑1 (MQ=255) cGCAGTTTCTCGCCGTACAgcggcccggcaaggagctgttcgtc > 2:821254‑M2/1‑19 (MQ=255) cGCAGTTTCTCGCCGTACAgcggcccggcaaggagctgttcgtc < 1:821254‑M2/44‑26 (MQ=255) gCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGt > 2:766112/1‑150 (MQ=255) gTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTg < 2:173919/62‑1 (MQ=255) gTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTg > 1:173919/1‑62 (MQ=255) tttCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGc < 2:250239/150‑1 (MQ=255) tcGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGc > 1:1075552/1‑150 (MQ=255) gTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATg > 2:1013521/1‑150 (MQ=255) tACAgcggcccggcaaggagctgttcgtcgacctcggtctggagcgtgccggcagcagtatcggcctgggtttgttgcgcggtgacgtgctgctggacctggagctcagtgccatggaaaaaagcggcaacggcgaaatcatttcgcagc > 1:451757‑M2/1‑4 (MQ=255) aGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGcacc > 1:774173/1‑150 (MQ=255) | GCCGTTGCCGCTTTTTTCCATGGCACTGAGCTCCAGGTCCAGCAGCACGTCACCGCGCAACAAAC‑CCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACC > NC_002947/5802128‑5802422 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |