| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6136887 | 37 (0.850) | 4 (0.100) | 4/234 | NT | 10.2% | coding (1172/1410 nt) | copS | copper sensor protein |
| ? | NC_002947 | = 6136925 | 36 (0.900) | coding (1210/1410 nt) | copS | copper sensor protein | |||||
CACGCTTCAAGGGAAAGGTGTCATCTCCGGAGACAGGCTCATGATCGACCGAGCTGTATCCAATATTCTCTCGAATGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6136729‑6136887‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatcaaaaaTCTTGTTGATGTGTTGTGGGTCAATGGTTGCCCCGCCGTTTTTGATCGTGAGGGTTACCTTGTCTGCGGCTTGCTGAATTTCTACCGAGATCCCGCTTCCGTCCGGCGTGTATCGAACGGCATTCGAGAGAATATTGGATACAGC < NC_002947/6136925‑6136781 CACGCTTCAAGGGAAAGGTGTCATCTCCGGAGACAGGCTCATGATCGACCGAGCTGTATCCAATATTCTCTCGAATGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCAC < 1:600309/150‑1CACGCTTCAAGGGAAAGGTGTCATCTCCGGAGACAGGCTCATGATCGACCGAGCTGTATCCAATATTCTCTCGAATGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCAC < 1:930348/150‑1 AGGGAAAGGTGTCATCTCCGGAGACAGGCTCATGATCGACCGAGCTGTATCCAATATTCTCTCGAATGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAA < 1:369589/150‑1 GATCGACCGAGCTGTATCCAATATTCTCTCGAATGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAATCTTGTTGATGTGTTGTGGGTCAATGGTTGCCC > 2:844313/1‑150 TCCAATATTCTCTCGAATGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAATCTTGTTGATGTGTTGTGGGTCAATGGTTGCCCCGCCGTTTTTGATCGT < 1:844313/150‑1 AATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAATCTTGTTGATGTGTTGTGGGTCAATGGTTGCCCCGCCGTTTTTGAT < 1:765140/88‑1 AATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAATCTTGTTGATGTGTTGTGGGTCAATGGTTGCCCCGCCGTTTTTGAT > 2:765140/1‑88 TCAAAAATCTTGTTGATGTGTTGTGGGTCAATGGTTGCCCCGCCGTTTTTGATCGTGAGGGTTACCTTGTCTGCGGCTTGCTGAATTTCTACCGAGATCCCGCTTCCGTCCGGCGTGTATCGAACGGCATTCGAGAGAATATTGTATACA < 1:668921/150‑1 TCAAAAATCTTGTTGATGTGTTGTGGGTCAATGGTTGCCCCGCCGTTTCTGATCGTGAGGGTTACCTTGTCTGCGGCTTGCTGAATT < 1:925140/87‑1 TCAAAAATCTTGTTGATGTGTTGTGGGTCAATGGTTGCCCCGCCGTTTCTGATCGTGAGGGTTACCTTGTCTGCGGCTTGCTGAATT > 2:925140/1‑87 AAAAATCTTGTTGATGTGTTGTGGGTCAATGGTTGCCCCGCCGTTTTTGATCGTGAGGGTTACCTTGTCTGCGGCTTGCTGAATTTCTACCGAGATCCCGCTTCCGTCCGGCGTGTATCGAACGGCATTCGAGAGAATATTGGATACAGC > 1:415059/1‑150 CACGCTTCAAGGGAAAGGTGTCATCTCCGGAGACAGGCTCATGATCGACCGAGCTGTATCCAATATTCTCTCGAATGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6136729‑6136887‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatcaaaaaTCTTGTTGATGTGTTGTGGGTCAATGGTTGCCCCGCCGTTTTTGATCGTGAGGGTTACCTTGTCTGCGGCTTGCTGAATTTCTACCGAGATCCCGCTTCCGTCCGGCGTGTATCGAACGGCATTCGAGAGAATATTGGATACAGC < NC_002947/6136925‑6136781 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |