New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6136887	37 (0.850)	4 (0.100)	4/234	NT	10.2%	coding (1172/1410 nt)	copS	copper sensor protein
	?	NC_002947	= 6136925	36 (0.900)					coding (1210/1410 nt)	copS	copper sensor protein

GCTGTATCCAATATTCTCTCGAATGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTGGGCTTGGTCTGGCCATTACCCGCTCCATCGTCAAAGCACATGATGGAAAAGTCTGGTGCACCTCGTCCGAAGGGGTTACAGCAT  >  NC_002947/6136781‑6137069                                                                                                                                                 |                                                                                                                                                 gCTGTATCCAATATTCTCTCGAATGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGAttttt                                                                                                                                             >  1:415059‑M2/1‑145 (MQ=255)   tGTATACAATATTCTCTCGAATGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGAtttttga                                                                                                                                           <  1:668921‑M2/150‑8 (MQ=255)             atTCTCTCGCCTGCCGCTCGATACCCGCCGGGCTAAAGCGCGATCCCGGAAGAAATTCATCAAGCCGCAAACAAAGCACCCCTCACTCCCACAAACAGCGGGCCAACCATTGACCCACAACACAACAACAAGATTTTTGATCGCTCCTAc                                                                                                                                 >  1:259616/1‑150 (MQ=255)             atTCTCTCGAATGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTAc                                                                                                                                 >  1:259615/1‑150 (MQ=255)                           cGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAATCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGc                                                                                                                   >  2:433111/1‑150 (MQ=255)                           cGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGACGCAGACAAGGTGACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCAGGCCGACCCGGc                                                                                                                   >  2:616658/1‑150 (MQ=255)                            gTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCa                                                                                                                  >  2:78853/1‑150 (MQ=255)                                    cacGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCgaga                                                                                                          >  1:337550/1‑150 (MQ=255)                                          ggacggaAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAgggggg                                                                                                    >  2:925091/1‑150 (MQ=255)                                           gacggaACCCAGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGCTTTTTGATCGCTGCTGCCGGGCCGACCCGGCAAGGCGAGAGGGGGGa                                                                                                   <  1:1017641/150‑1 (MQ=255)                                                    gggATCTCGGTAGAACCTCAGCAATCCGCAGACAAGGCAACCCCCACGATCAAAACAAATGCGGCAACCATTGCCACGAAAAGCAGCTGCAACTTGTTGGAATGGCTGTTCGTGGCCTTCCCTGCAAGGCGAGAGGGGGGACCTAGCAAt                                                                                          <  2:971486/150‑1 (MQ=255)                                                       aTCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCt                                                                                       >  1:456515/1‑150 (MQ=255)                                                        tctcTGTAGACTGTCAGCAAGCCCCACACTAGGTAACCCTCACTATAAAAGACGGCGGGGCAACCATTGACCCACCACACTTCAACGAGATGTTCGCTCGCTTCTACCGGGCCGTCCCGGCAAGGTGAGAGGGGGGACATAGctctggtg                                                                                      <  2:259616/150‑8 (MQ=255)                                                        tctcGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACACCACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCTAGAGGGGGGACCTAGCAATGCTg                                                                                      <  2:553426/150‑1 (MQ=255)                                                        tctcGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTg                                                                                      <  1:1027386/150‑1 (MQ=255)                                                        tctcGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTg                                                                                      <  2:259615/150‑1 (MQ=255)                                                                  aaTTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAGAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGAtttttga                                                                                                                                           >  2:925140‑M2/1‑80 (MQ=255)                                                                  aaTTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAGAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGAtttttga                                                                                                                                           <  1:925140‑M2/87‑8 (MQ=255)                                                                        gCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAGCGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTg                                                                                      >  2:594533/1‑134 (MQ=255)                                                                        gCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTg                                                                                      <  1:594533/134‑1 (MQ=255)                                                                         cAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTGGGCTTGGTCTGGCCAtt                                                                     <  2:668921/150‑1 (MQ=255)                                                                           aGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTGGGCTTGGTCTGGCCATTAc                                                                   >  2:448668/1‑150 (MQ=255)                                                                              cGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTGGGCTTGGTCTGGCCATTACCCg                                                                >  2:878174/1‑150 (MQ=255)                                                                                       ggTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTGGGCTTGGTCTGGCCATTACCCGCTCCATCGt                                                       >  2:1120217/1‑150 (MQ=255)                                                                                            cccTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTGGGCTTGGTCTGGCCATTACCCGCTCCATCGTCAAAg                                                  <  1:616658/150‑1 (MQ=255)                                                                                               tCACGATCAAAAACGGCGGGGCAACCATTGCCCCACAACACAGCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTGGGCTTGGTCTGGCCATTACCCGCTCCATCGTCAAAGcac                                               <  1:72828/150‑1 (MQ=255)                                                                                               tCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTGGGCTTGGTCTGGCCATTACCCGCTCCATCGTCAAAGcac                                               >  1:259770/1‑150 (MQ=255)                                                                                                 aCGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGAtttttgatcgtgagggttaccttgtctgcggcttgctgaatttctaccgagatcccgcttccgtccggcgtgtatcgaacggcattcgagagaatattgga                                             <  1:844313‑M2/150‑102 (MQ=255)                                                                                                    aTCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGAtttttgatcgtgagggttaccttgtctgcggcttgctgaatt                                                                                                        <  1:765140‑M2/88‑43 (MQ=255)                                                                                                    aTCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGAtttttgatcgtgagggttaccttgtctgcggcttgctgaatt                                                                                                        >  2:765140‑M2/1‑46 (MQ=255)                                                                                                                 gggCAACCATTGACCCACAACACATCAACAAGAtttttgatcgtgagggttaccttgtctgcggcttgctgaatttctaccgagatcccgcttccgtccggcgtgtatcgaacggcattcgagagaatattggatacagctcggtcgatc                             >  2:844313‑M2/1‑33 (MQ=255)                                                                                                                 gggCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTGGGCTTGGTCTGGCCATTACCCGCTCCATCGTCAAAGCACATGATGGAAAAGTCTGGt                             <  1:433111/150‑1 (MQ=255)                                                                                                                      aCCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTGGGCTTGGTCTGGCCATTACCCGCTCCATCGTCAAAGCACATGATGGAAAAGTCTGGTGCAcc                        >  2:1107037/1‑150 (MQ=255)                                                                                                                           tGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTGGGCTTGGTCTGGCCATTACCCGCTCCATCGTCAAAGCACATGATGGAAAAGTCTGGTGCACCTCGTc                   <  1:878174/150‑1 (MQ=255)                                                                                                                             aCCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTGGGCTTGGTCTGGCCATTACCCg                                                                >  2:313081/1‑103 (MQ=255)                                                                                                                             aCCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTGGGCTTGGTCTGGCCATTACCCg                                                                <  1:313081/103‑1 (MQ=255)                                                                                                                                 acaacaCATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTGGGCTTGGTCTGGCCATTACCCGCTCCATCGTCAAAGCACATGATGGAAAAGTCTGGTGCACCTCGTCCGAAgg             >  1:743863/1‑150 (MQ=255)                                                                                                                                 acaacaCATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTGCGCTTGGTCTGGCCATTACCCGCTCCATCGTCAAAGCACATGATGGAAAAGTCTGGTGCACCTCGTCCGAAgg             >  2:768642/1‑150 (MQ=255)                                                                                                                                  caacaCATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTGGGCTTGGTCTGGCCATTACCCGCTCCATCGTCAAAGCACATGATGGAAAAGTCTGGTGCACCTCGTCCGAAggg            <  1:448668/150‑1 (MQ=255)                                                                                                                                        aTCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTGGGCTTGGTCTGGCCATTACCCGCTCCATCGTCAAAGCACATGATGGAAAAGTCTGGTGCACCTCGTCCGAAGGGGTTACa      <  1:925091/150‑1 (MQ=255)                                                                                                                                         tCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTGGGCTTGGTCTGGCCATTACCCGCTCCATCGTCAAAGCACATGATGGAAAAGTCTg                               >  2:677987/1‑124 (MQ=255)                                                                                                                                         tCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTGGGCTTGGTCTGGCCATTACCCGCTCCATCGTCAAAGCACATGATGGAAAAGTCTg                               <  1:677987/124‑1 (MQ=255)                                                                                                                                         tCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTGGGCTTGGTCTGGCCATTACCCGCTCCATCGTCAAAGCACATGATGGAAAAGTCTGGTGCACCTCGTCCGAAGGGGTTACAg     <  1:1107037/150‑1 (MQ=255)                                                                                                                                            acaaGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTGGGCTTGGTCTGGCCATTACCCGCTCCATCGTCAAAGCACATGATGGAAAAGTCTGGTGCACCTCGTCCGAAGGGGTTACAGCAt  <  2:337550/150‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                 GCTGTATCCAATATTCTCTCGAATGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTGGGCTTGGTCTGGCCATTACCCGCTCCATCGTCAAAGCACATGATGGAAAAGTCTGGTGCACCTCGTCCGAAGGGGTTACAGCAT  >  NC_002947/6136781‑6137069

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.