New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 94121	42 (0.970)	3 (0.070)	3/240	NT	6.5%	coding (418/897 nt)	trpI	HTH‑type transcriptional regulator TrpI
	?	NC_002947	= 94200	46 (1.120)					coding (497/897 nt)	trpI	HTH‑type transcriptional regulator TrpI

ATGTGAGCGAGGCGCCATTCGTGCTGGGCTGCTCGGGCAGCCTGCTGGCGCGGTGGTTTATTCCGCGGCTGGGGCGGTTGCAGGCGGATTTGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCATGTGCTGGCCGAGGAATGCATCGGGCCGGTGCTCAGCCCGCATTTCGCAGGTTTCCAGCGCTTGCAGGGCGCGCCCGCCAAGGCACTGCT  >  NC_002947/93972‑94269                                                                                                                                                      |                                                                                                                                                     aTGTGAGCGAGGCGCCATTCGTGCTGGGCTGCTCGGGCAGCCTGCTGGCGCGGTGGTTTATTCCGCGGCTGGGGCGGTTGCAGGCGGATTTGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCG                                                                                                                                                      <  2:17250‑M1/150‑1 (MQ=255)    tgAGCGAGGCGCCATTCGTGCTGGGCTGCTCGGGCAGCCTGCTGGCGCGGTGGTTTATTCCGCGGCTGGGGCGGTTGCAGGCGGATTTGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGc                                                                                                                                                   >  2:671478/1‑150 (MQ=255)    tgAGCGAGGCGCCATTCGTGCTGGGCTGCTCGGGCAGCCTGCTGGCGCGGTGGTTTATTCCGCGGCTGGGGCGGTTGCAGGCGGATTTGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGc                                                                                                                                                   >  2:671073/1‑150 (MQ=255)         ggggCGCCATTCGTGCTGGGCTGCTCGGGCAGCCTGCGGGGGCGGTGGTTTATTCCGCGGCTGGGGCGGTTGCAGGCGGATTTGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTNGAt                                                                                                                                              <  2:703812/148‑1 (MQ=255)               ccATTCGTGCTGGGCTGCTCGGGCAGCCTGCTGGCGCGGTGGTTTATTCCGCGGCTGGGGCGGTTGCAGGCGGATTTGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTg                                                                                                                                        >  1:294413/1‑150 (MQ=255)                    gccagcaggCTGCCCGAGCAGCCTGCTGGCGCGGTGGTTTATTCCGCGGCTGGGGCGGTTGCAGGCGGATTTGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGgt                                                                                                                                   >  1:204807/8‑150 (MQ=255)                      tGCTGGGCTGCTCGGGCAGCCTGCTGGCGCGGTGGTTTATTCCGCGGATGCGGCGGTTGCAGGCGGATTTGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGgtgt                                                                                                                                 >  1:868901/1‑150 (MQ=255)                          gggCTGCTCGGGCAGCCTGCTGGCGCGGTGGTTTATTCCGCGGCTGGGGCGGTTGCAGGCGGATTTGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGc                                                                                                                             >  1:859821/1‑150 (MQ=255)                           ggCTGCTCGGGCAGCCTGCTGGCGCGGTGGTTTATTCCGCGGCTGGGGCGGTTGCAGGCGGATTTGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGcc                                                                                                                            >  2:218489/1‑150 (MQ=255)                             ctgctCGGGCAGCCTGCTGGCGCGGTGGTTTATTCCGCGGCTGGGGCGGTTGCAGGCGGATTTGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGa                                                                                                                          <  1:915645/150‑1 (MQ=255)                                 tCGGGCAGCCTGCTGGCGCGGTGGTTTATTCCGCGGCTGGGGCGGTTGCAGGCGGATTTGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGGTGCGTTGCTGGGGTATGCCGAGCCa                                                                                                                      >  1:715102/1‑150 (MQ=255)                                       aGCCTGCTGGCGCGGTGGTTTATTCCGCGGCTGGGGCGGTTGCAGGCGGATTTGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTgg                                                                                                                <  1:1048869/150‑1 (MQ=255)                                            gctgGCGCGGTGGTTTATTCCGCGGCTGGGGCGGTTGCAGGCGGACTTGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGc                                                                                                           <  1:345078/150‑1 (MQ=255)                                             ctgGCGCGGTGGTTTATTCCGCGGCTGGGGCGGTTGCAGGCGGATTTGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGca                                                                                                          <  1:218489/150‑2 (MQ=255)                                                        gtTTATTCCGCGGCTGGGGCGGTTGCAGGCGGATTTGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGt                                                                                               <  1:3856/150‑1 (MQ=255)                                                        gtTTATTCCGCGGCTGGGGCGGTTGCAGGCGGATTTGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGt                                                                                               <  1:679407/150‑1 (MQ=255)                                                        gtTTATTCCGCGGCTGGGGCGGTTGCAGGCGGATTTGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGt                                                                                               >  2:877537/1‑150 (MQ=255)                                                        gtTTATCCCGCGGCTGGGGCGGTTGCAGGCGGATTTGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGt                                                                                               <  1:430731/150‑1 (MQ=255)                                                            aTTCCGCGGCTGGGGCGGTTGCAGGCGGATTTGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCAt                                                                                           <  1:671073/150‑1 (MQ=255)                                                            aTTCCGCGGCTGGGGCGGTTGCAGGCGGATTTGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCAt                                                                                           <  1:671478/150‑1 (MQ=255)                                                            aTTCCGCGGCTGGGGCGGTTGCAGGCGGATTTGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCAt                                                                                           <  1:1028729/150‑1 (MQ=255)                                                               ccGCGGCTGGGGCGGTTGCAGGCGGATTTGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCAtgtg                                                                                        <  1:646030/150‑1 (MQ=255)                                                                 gcgGCTGGGGCGGTTGCAGGCGGATTTGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGatgcattcctcggccagcacatgcacctgcatgtccgctggccacggtggctcggcatacacca                                                                                      >  1:472235‑M1/1‑86 (MQ=255)                                                                 gcgGCTGGGGCGGTTGCAGGCGGATTTGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCATGTGCt                                                                                      >  1:798195/1‑150 (MQ=255)                                                                       ggggCGGTTGCAGGCGGATTTGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCATGTGCTGGCCGa                                                                                <  2:90600/150‑1 (MQ=255)                                                                          gCGGTTGCAGGCGGATTTGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCATGTGCTGGCCGAGGa                                                                             <  2:961149/150‑1 (MQ=255)                                                                                     cGGATTTGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCATGTGCTGGCCGAGGAATGCATcgggc                                                                  >  1:50560‑M2/1‑145 (MQ=255)                                                                                         tttGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGTGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCATGTGCTGGCCGAGGAATGCATCGGGCCGGt                                                              >  2:1053960/1‑150 (MQ=255)                                                                                         tttGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCATGTGCTGGCCGAGGAATGCATCGGGCCGGt                                                              >  1:645139/1‑150 (MQ=255)                                                                                          ttGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGatgcattcctcggccagcacatgcacctgcatgtccgctggccacggtggctcggcatacaccagcaacgcatccagcccgggccgccg                                                             <  2:955136‑M1/150‑90 (MQ=255)                                                                                             ccTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCATGTGCTGGCCGAGGAATGCATCGGGCCGGTGCTc                                                          >  1:737898/1‑150 (MQ=255)                                                                                              cTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGatgcattcctcggccagcacatgcacctgcatgtccgctggccacggtggctcggcatacaccagcaacgcatccagcccgggccgccgcggg                                                         <  2:472235‑M1/150‑94 (MQ=255)                                                                                              cTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCATGTGCTGGCCGAGGAATGCATCGGGCCGGTGCTCa                                                         <  2:204807/150‑1 (MQ=255)                                                                                               tGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCATGTGCTGGCCGAGGAATGCATCGGGCCGGTGCTCAg                                                        >  1:1038580/1‑150 (MQ=255)                                                                                                     gcgcTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCATGTGCTGGCCGAGGAATGCATCGGGCCGGTGCTCAGCCCGCa                                                  >  1:1109583/1‑150 (MQ=255)                                                                                                                tGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCATGTGCTGGCCGAGGAATGCATCGGGCCGGTGCTCAGCCCGCATTTCGCAGGtt                                       >  1:70606/1‑150 (MQ=255)                                                                                                                tGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCATGTGCTGGCCGAGGAATGCATCGGGCCGGTGCTCAGCCCGCATTTCGCAGGtt                                       >  2:95128/1‑150 (MQ=255)                                                                                                                tGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCATGTGCTGGCCGAGGAATGCATCGGGCCGGTGCTCAGCCCGCATTTCGCAGGtt                                       >  1:174700/1‑150 (MQ=255)                                                                                                                  tCGGCGGGTGAGGGCGACCTTGACCCTCGGCGGCCCGGGCTTGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCATGTGCTGGCCGAGGAATGCATCGGGCCGGTGCTCAGCCCGCATTTCGCAGGTTTc                                     >  2:1038964/1‑150 (MQ=255)                                                                                                                    ggcggGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCATGTGCTGGCCGAGGAATGCATCGGGCCGGTGCTCAGCCCGCATTTCGCAGGTTTCCa                                   >  1:270609/1‑150 (MQ=255)                                                                                                                             gggCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCATGTGCTGGCCGAGGAATGCATCGGGCCGGTGCTCAGCCCGCATTTCGCAGGTTTCCAGCGCTTGCa                          >  1:679261/1‑150 (MQ=255)                                                                                                                              ggCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCTGACATGCAGGTGCATGTGCTGGCCGAGGAATGCATCGGGCCGGTGCGCAGCCCGCATTTCGCAGGTTTCCAGCGCTTGCAg                         >  1:593428/1‑150 (MQ=255)                                                                                                                              ggCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCATGTGCTGGCCGAGGAATGCATCGGGCCGGTGCTCAGCCCGCATTTCGCAGGTTTCCAGCGCTTGCAg                         >  2:406073/1‑150 (MQ=255)                                                                                                                              ggCGACCCTGACCCGCGGCGGCCCGGGCTGGATGCGCTGCGTGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCATGTGCTGGCCGAGGAATGCATCGGGCCGGTGCTCAGCCCGCATTTCGCAGGTTTCCAGCGCTTGCAg                         <  1:11158/150‑1 (MQ=255)                                                                                                                               gCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCATGTGCTGGCCGAGGAATGCATCGGGCCGGTGCTCAGCCCGCATTTCGCAGGTTTCCAGCGCTTGCAgg                        <  2:859821/150‑1 (MQ=255)                                                                                                                                   ccTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCATGTGCTGGCCGAGGAATGCATCGGGCCGGTGCTCAGCCCGCATTTCGCAGGTTTCCAGCGCTTGCAGGgcgc                    <  1:421990/150‑1 (MQ=255)                                                                                                                                    cTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCATGTGCTGGCCGAGGAATGCATCGGGCCGGTGCTCAGCCCGCATTTCGCAGGTTTCCAGCGCTTGCAGGgcgcg                   >  2:742754/1‑150 (MQ=255)                                                                                                                                         cccGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCATGTGCTGGCCGAGGAATGCATcgggccgccgcgggtcaaggtcgccctcacccgccgacaggtgcaagcgcagctcag              <  2:472235‑M2/150‑58 (MQ=255)                                                                                                                                          ccGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCATGTGCTGGCCGAGGAATGCATCGGGCCGGTGCTCAGCCCGCATTTCGCAGGTTTCCAGCGCTTGCAGGGCGcgcccgcc             >  2:414558/1‑150 (MQ=255)                                                                                                                                             cggcggCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCATGTGCTGGCCGAGGAATGCATcgggccgccgcgggtcaaggtcgccctcacccgccgacaggtgcaagcgcagctcaggcaa          <  2:955136‑M2/150‑62 (MQ=255)                                                                                                                                              ggtggcCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCATGTGCTGGCCGAGGAATGCATCGGGCCGGTGCTCAGCCCGCATTTCGCAGGTTTCCAGCGCTTGCAGGGCGCGCCCGCCAAgg         <  1:1053960/147‑1 (MQ=255)                                                                                                                                                  gcCCGatgcattcctcggccagcacatgcacctgcatgtccgctggccacggtggctcggcatacaccagcaacgcatccagcccgggccgccgcgggtcaaggtcgccctcacccgccgacaggtgcaagcgcagctcaggcaaatccg     >  1:50560‑M1/1‑5 (MQ=255)                                                                                                                                                    ccGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCATGTGCTGGCCGAGGAATGCATCGGGCCGGTGCTCAGCCCGCATTTCGCAGGTTTCCAGCGCTTGCAGGGCGCGCCCGCCAAGGCActgc   >  1:910206/1‑150 (MQ=255)                                                                                                                                                     cGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCATGTGCTGGCCGAGGAATGCATCGGGCCGGTGCTCAGCCCGCATTTCGCAGGTTTCCAGCGCTTGCAGGGCGCGCCCGCCAAGGCActgct  >  1:230125/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                     ATGTGAGCGAGGCGCCATTCGTGCTGGGCTGCTCGGGCAGCCTGCTGGCGCGGTGGTTTATTCCGCGGCTGGGGCGGTTGCAGGCGGATTTGCCTGAGCTGCGCTTGCACCTGTCGGCGGGTGAGGGCGACCTTGACCCGCGGCGGCCCGGGCTGGATGCGTTGCTGGTGTATGCCGAGCCACCGTGGCCAGCGGACATGCAGGTGCATGTGCTGGCCGAGGAATGCATCGGGCCGGTGCTCAGCCCGCATTTCGCAGGTTTCCAGCGCTTGCAGGGCGCGCCCGCCAAGGCACTGCT  >  NC_002947/93972‑94269

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.