New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	259838 =	52 (1.200)	3 (0.070)	3/238	NT	6.6%	coding (1372/1407 nt)	PP_0207	nitrate ABC transporter substrate‑binding protein
	?	NC_002947	259875 =	36 (0.890)					intergenic (+2/‑14)	PP_0207/PP_0208	nitrate ABC transporter substrate‑binding protein/nitrate ABC transporter permease

TACGCCCAGGCCGCCGACAGTGGCATCAAATTGCTCGCCAACCAGGCCTGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCAAGTGGCGGCAAACGTGAAAATGGACCTTG  >  NC_002947/259691‑259985                                                                                                                                                    |                                                                                                                                                    ctcGCCCAGGCCGCCGACAGTGGCATCAAATTGCTCGCCAACCAGGCCTGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTc                                                                                                                                                   >  1:486950/3‑150 (MQ=255)  cttgggtgtagggacataggtgaacgtcagcagaccaaggtccattttcacgtttgccgcaacttgccagaacagcaggcaggccagcagctacgccaggcgcaccggccatcgcttgagtttgcgggtcatgtcggtgcctcccgGTCa                                                                                                                                                  >  2:971824‑M1/147‑150 (MQ=255)      ccAGGCCGCCGACAGTGGCATCAAATTGCTCGCCAACCAGGCCTGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACCAGGCAGAGCAGTCTGATTGAGACCATTGTGTCGAGGCGCTGGACTTCGTCAgcgc                                                                                                                                              >  1:804517/1‑150 (MQ=255)                  cAGTGGCATCAAATTGCTCGCCAACCAGGCCTGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCt                                                                                                                                  <  1:1109289/150‑1 (MQ=255)                     tGGCATCAAATTGCTCGCCAACCAGGCCTGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGt                                                                                                                               >  1:123130/1‑150 (MQ=255)                      ggCATCAAATTGCTCGCCAACCAGGCCTGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTc                                                                                                                              >  2:671725/1‑150 (MQ=255)                       gCATCAAATTGCTCGCCAACCAGGCCTGGTTCGTGCGAAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCg                                                                                                                             >  1:140760/1‑150 (MQ=255)                           cAAATTGCTCGCCAACCAGGCCTGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCa                                                                                                                         >  1:587198/1‑150 (MQ=255)                             aaTTGCTCGCCAACCAGGCCTGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAgc                                                                                                                       >  1:989134/1‑150 (MQ=255)                                  cTCGCCAACCAGGCCTGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGa                                                                                                                  <  1:918587/150‑1 (MQ=255)                                   tCGCCAACCAGGCCTGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCa                                                                                                                         <  2:796645/142‑1 (MQ=255)                                   tCGCCAACCAGGCCTGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCa                                                                                                                         >  1:796645/1‑142 (MQ=255)                                   tCGCCAACCAGGCCTGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGAc                                                                                                                 >  1:1127586/1‑150 (MQ=255)                                   tCGCCAACCAGGCCTGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGAc                                                                                                                 >  1:330469/1‑150 (MQ=255)                                      ccAACCAGGCCTGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCgg                                                                                                              >  2:305743/1‑150 (MQ=255)                                        ggtccattttcacgtttgccgccacttgccagaacagcaggcaggccagcagcgacgccaggcgcaccggccagcgcttgaggttgcgggtcatgtcggtgcctcccgGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGa                                                                                                            >  2:297766‑M1/109‑150 (MQ=255)                                        aaCCAGGCCTGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGa                                                                                                            <  2:989134/150‑1 (MQ=255)                                        aaCCAGGCCTGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGCCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGGCGCCCAGCGCTGACCGGGa                                                                                                            >  2:244630/1‑150 (MQ=255)                                           cAGGCCTGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGc                                                                                                         >  1:635724/1‑150 (MQ=255)                                                cTGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGa                                                                                                    <  1:115996/150‑1 (MQ=255)                                                 tGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGAc                                                                                                   <  2:330469/150‑1 (MQ=255)                                                         gcgcAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTGAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGGGGCACCGACATGACCCg                                                                                           >  2:786289/1‑150 (MQ=255)                                                             aaCGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAAc                                                                                       >  1:413949/1‑150 (MQ=255)                                                                                cggcATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAgcgc                                                                              <  1:652809/140‑1 (MQ=255)                                                                                cggcATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAgcgc                                                                              >  2:652809/1‑140 (MQ=255)                                                                                 ggcATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGAATCGCAACCTCAAGCGCTGGCCGGTgcg                                                                   >  1:280429/1‑150 (MQ=255)                                                                                         tGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAgc                                                                                                                       <  2:862870/90‑1 (MQ=255)                                                                                         tGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAgc                                                                                                                       >  1:862870/1‑90 (MQ=255)                                                                                         tGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGt                                                           >  2:355608/1‑150 (MQ=255)                                                                                            tCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTg                                                                                                                                 >  1:44975/1‑77 (MQ=255)                                                                                            tCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTg                                                                                                                                 <  2:44975/77‑1 (MQ=255)                                                                                            tCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGAc                                                                                              >  2:726918/1‑112 (MQ=255)                                                                                            tCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGAc                                                                                              <  1:726918/112‑1 (MQ=255)                                                                                              aaGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGa                                                                                                            >  1:155511/1‑96 (MQ=255)                                                                                              aaGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGa                                                                                                            <  2:155511/96‑1 (MQ=255)                                                                                              aaGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCgctg                                                      >  1:654170/1‑150 (MQ=255)                                                                                                 gACCAGGCCGATCAGTCTGCCAAGGTCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGGCGctgctg                                                   >  2:592967/1‑150 (MQ=255)                                                                                                  aCCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGt                                                                                                                               <  1:6480/73‑1 (MQ=255)                                                                                                  aCCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGt                                                                                                                               >  2:6480/1‑73 (MQ=255)                                                                                                   ccAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGgc                                                 <  1:655585/150‑1 (MQ=255)                                                                                                      ggCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGgcctg                                              >  1:215533/1‑150 (MQ=255)                                                                                                       gCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGgcctgc                                             <  1:785310/150‑1 (MQ=255)                                                                                                          gAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGcctgactg                                          <  2:1127586/150‑1 (MQ=255)                                                                                                                  tGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGCCCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTg                                  <  1:572873/150‑1 (MQ=255)                                                                                                                     cAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCa                               >  1:77679/1‑150 (MQ=255)                                                                                                                      aaGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCaa                              <  2:123130/150‑1 (MQ=255)                                                                                                                          gttgcgggtcatgtcggtgcctcccgGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGa                                                                                                                  <  2:322657‑M1/36‑1 (MQ=255)                                                                                                                          gttgcgggtcatgtcggtgcctcccgGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGa                                                                                                                  >  1:322657‑M1/27‑62 (MQ=255)                                                                                                                           ccATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCAAGTggc                         >  2:934440/1‑150 (MQ=255)                                                                                                                            cATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCAAGTggcg                        <  2:654170/150‑1 (MQ=255)                                                                                                                             aTGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGTGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCAAGTggcgg                       <  2:486950/150‑1 (MQ=255)                                                                                                                             aTGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCAAGTggcgg                       <  2:413949/150‑1 (MQ=255)                                                                                                                                   gCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGa                                                                                                            >  2:955217/1‑59 (MQ=255)                                                                                                                                   gCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGa                                                                                                            <  1:955217/59‑1 (MQ=255)                                                                                                                                      aGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCAAGTGGCGGCAAACGTGa              <  2:635724/150‑1 (MQ=255)                                                                                                                                           cTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCAAGTGGCGGCAAACGTGAAAATg         <  1:724964/150‑1 (MQ=255)                                                                                                                                              gACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCAAGTGGCGGCAAACGTGAAAATGGAc      >  1:712613/1‑150 (MQ=255)                                                                                                                                                  tCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCAAGTGGCGGCAAACGTGAAAATGGACCTTg  <  1:305743/150‑1 (MQ=255)                                                                                                                                                  tCGTCAGCGCCAACCAGAAGCTGGGCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAATCGTGATGCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTCTTCTGGCAAGTGGCGGCAAACCTGAAAATGGACCTTg  <  2:534226/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    TACGCCCAGGCCGCCGACAGTGGCATCAAATTGCTCGCCAACCAGGCCTGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCAAGTGGCGGCAAACGTGAAAATGGACCTTG  >  NC_002947/259691‑259985

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.