New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 1176938 =53 (1.220)3 (0.070) 3/238 NT 5.8% coding (1363/1470 nt) guaB IMP dehydrogenase and single strand DNA binding factor
?NC_002947 1176967 = 48 (1.180)coding (1392/1470 nt) guaB IMP dehydrogenase and single strand DNA binding factor

CCTCGGCCGGCGCCGAGAAGCTGGTACCGGAAGGCATCGAAGGCCGCGTTCCTTACAAAGGCGCCCTGGCCGCGATCATCCACCAGCTGATGGGCGGCCTGCGTTCGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGCAAATCACCAAAGAAGCCCCTAACTACCGCGTAGGCTGAGGCTTCCAGCTACAACATAAAGCGGGGCTGTCATGACAG  >  NC_002947/1176795‑1177084
                                                                                                                                               |                                                                                                                                                  
agtggaaatcggaaacgacgcggggctgtcatgacagccccgctttatgttgtagctggaagcctcagcctacgccggagttaggggcttcttggtggatgtgcacgtcgtgcacgtgggactcggccatgccggcaccggtgATGCGCa                                                                                                                                              >  1:689429‑M1/144‑150 (MQ=255)
 ctcGGCCGGCGCCGAGAAGCTGGTACCGGAAGGCATCGAAGGCCGCGTTCCTTACAAAGGCGCCCTGGCCTCGATCATCCACCAGCTGATGGGCGGCCTGCGTTCGTCCACGGTTAACACAGGCAGCGCAACCATCGAAGAAATGCGCAc                                                                                                                                             >  1:336208/1‑150 (MQ=255)
 ctcGGCCGGCGCCGAGAAGCTGGTACCGGAAGGCATCGAAGGCCGCGTTCCTTACAAAGGCGCCCTGGCCGCGATCATCCACCAGCTGATGGGCGGCCTGCGTTCGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCAc                                                                                                                                             >  1:971444/1‑150 (MQ=255)
  tcGGCCGGCGCCGAGAAGCTGGTACCGGAAGGCATCGAAGGCCGCGTTCCTTACAAAGGCGCCCTGGCCGCGATCATCCACCAGCTGATGGGCGGCCTGCGTTCGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCAcc                                                                                                                                            >  2:732992/1‑150 (MQ=255)
                 aaGCTGGTACCGGAAGGCATCGAAGGCCGCGTTCCTTACAAAGGCGCCCTGGCCGCGATCATCCACCAGCTGATGGGCGGCCTGCGTTTGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTg                                                                                                                             <  1:835819/150‑1 (MQ=255)
                 aaGCTGGTACCGGAAGGCATCGAAGGCCGCGTTCCTTACAAAGGCGCCCTGGCCGCGATCATCCACCAGCTGATGGGCGGCCTGCGTTCGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTg                                                                                                                             <  1:695637/150‑1 (MQ=255)
                  aGCTGGTACCGGAAGGCATCGAAGGCCGCGTTCCTTACAAAGGCGCCCTGGCCGCGATCATCCACCAGCTGATGGGCGGCCTGCGTTCGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTgc                                                                                                                            <  1:978134/150‑1 (MQ=255)
                     tGGTACCGGAAGGCATCGAAGGCCGCGTTCCTTACAAAGGCGCCCTGGCCGCGATAATCCACCAGCTGATGGGCGGCCTGCGTTCGTCCATGGGCTACACCGGCCGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTggcca                                                                                                                         >  2:136873/1‑146 (MQ=255)
                         aCCGGAAGGCATCGAAGGCCGCGTTCCTTACAAAGGCGCCCTGGCCGCGATCATCCACCAGCTGATGGGCGGCCTGCGTTCGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCAc                                                                                                                     <  1:889810/150‑1 (MQ=255)
                         aCCGGAAGGCATCGAAGGCCGCGTTCCTTACAAAGGCGCCCTGGCCGCGATCATCCACCAGCTGATGGGCGGCCTGCGTTCGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCAc                                                                                                                     <  1:761802/150‑1 (MQ=255)
                            ggAAGGCATCGAAGGCCGCGTTCCTTACAAAGGCGCCCTGGCCGCGATCATCCACCAGCTGATGGGCGGCCTGCGTTCGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCgg                                                                                                                  <  1:1001326/150‑1 (MQ=255)
                                   aTCGAAGGCCGCGTTCCTTACAAAGGCGCCCTGGCCGCGATCATCCACCAGCTGATGGGCGGCCTGCGTTCGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGc                                                                                                           >  2:1033502/1‑150 (MQ=255)
                                          gCCGCGTTCCTTACAAAGGCGCCCTGGCCGCGATCATCCACCAGCTGATGGGCGGCCTGCGTTCGTCCATGGGCTACAACGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCg                                                                                                    >  1:747354/1‑150 (MQ=255)
                                           ccGCGTTCCTTACAAAGGCGCCCTGGCCGCGATCATCCACCAGCTGATGGGCGGCCTGCGTTCGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGa                                                                                                   <  1:380956/150‑1 (MQ=255)
                                                ttCCTTACAAAGGCGCCCTGGCCGCGATCATCCACCAGCTGATGGGCGGTCTGGGTTCGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTccc                                                                                              >  1:630852/1‑150 (MQ=255)
                                                    ttACAAAGGCGCCCTGGCCGCGATCATCCACCAGCTGATGGGCGGCCTGCGTTCGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGCGTCCCACGt                                                                                          >  2:348487/1‑150 (MQ=255)
                                                    ttACAAAGGCGCCCTGGCCGCGATCATCCACCAGCTGATGGGCGGCCTGCGTTCGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCAGGCATGGCCGAGTCCCGCGt                                                                                          >  2:793699/1‑150 (MQ=255)
                                                        aaaGGCGCCCTGGCCGCGATCATCCACCAGCTGATGGGCGGCCTACGTTCGTTCATTGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCac                                                                                      <  2:476759/150‑1 (MQ=255)
                                                               cccTGGCCGCGATCATCCACCAGCTGATGGGCGGCCTGCGTTCGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGc                                                                               <  2:135435/150‑1 (MQ=255)
                                                               cccTGGCCGCGATCATCCACCAGCTGATGGGCGGCCTGCGTTCGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATACTCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGc                                                                               >  1:560764/1‑150 (MQ=255)
                                                                  tGGCCGCGATCATCCACCAGCTGATGGGCGGCCTGCGTTCGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGCaaa                                                                            >  1:162793/1‑150 (MQ=255)
                                                                    gCCGCGATCATCCACCAGCTGATGGGCGGCCTGCGTTCGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGTCGTGCacgtg                                                                          <  2:532171/150‑5 (MQ=255)
                                                                    gCCGCGATCATCCACCAGCTGATGGGCGGCCTGCGTTCGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGCAAATc                                                                          <  2:162793/150‑1 (MQ=255)
                                                                       gcgATCATCCACCAGCTGATGGGCGGCCTGCGTTCGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCAc                                                                                            <  2:37223/129‑1 (MQ=255)
                                                                       gcgATCATCCACCAGCTGATGGGCGGCCTGCGTTCGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCAc                                                                                            >  1:37223/1‑129 (MQ=255)
                                                                         gATCATCCACCAGCTGATGGGCGGCCTGCGTTCGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGCAAATCACCaa                                                                     >  1:355171/1‑150 (MQ=255)
                                                                         gATCATCCACCAGCTGATGGGCGGCCTGCGTTCGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGCAAATCACCaa                                                                     >  1:355146/1‑150 (MQ=255)
                                                                              tcCACCAGCTGATGGGCGGCCTGCGTTCGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGCAAATCACCAaagaag                                                                >  2:148850/1‑150 (MQ=255)
                                                                               ccaccaGCTGATGGGCGGCCTGCGTTCGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGCAAATCACCAAAGAAGc                                                               <  1:732992/150‑1 (MQ=255)
                                                                                 accaGCTGATGGGCGGCCTGCGTTCGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGCAAATCACCAAAGAAGccc                                                             >  1:490789/1‑150 (MQ=255)
                                                                                 accaGCTGATGGGCGGCCTGCGTTCGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGCAAATCACCAAAGAAGccc                                                             <  1:654358/150‑1 (MQ=255)
                                                                                  ccaGCTGATGGGCGGCCTGCGTTCGTCCATGGGCTAAACCTGTAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGCAAATCACCAAAGAAGcccc                                                            <  1:11224/150‑1 (MQ=255)
                                                                                             gcggcCTGCGTTCGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGCAAATCACCAAAGAAGCCCCTAACTACcgcg                                                 >  1:903675/1‑150 (MQ=255)
                                                                                                   tGCGTTCGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGCAAATCACCAAAGAAGCCCCTAACTACCGCGTAGGCt                                           >  2:875327/1‑150 (MQ=255)
                                                                                                   tGCGTTCGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGCAAATCACCAAAGAAGCCCCTAACTACCGCGTAGGCt                                           >  1:509869/1‑150 (MQ=255)
                                                                                                      gcacgtcgtgcacgtgggactcggccatgccggcaccggtgATGCGCACCAAGCCGGAGTTCGTgcgc                                                                                                                          <  1:951786‑M1/27‑1 (MQ=255)
                                                                                                      gcacgtcgtgcacgtgggactcggccatgccggcaccggtgATGCGCACCAAGCCGGAGTTCGTgcgc                                                                                                                          >  2:951786‑M1/42‑68 (MQ=255)
                                                                                                       ttCGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGCAAATCACCAAAGAAGCCCCTAACTACCGCGTAGGCTGAgg                                       >  2:257449/1‑150 (MQ=255)
                                                                                                           tCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGCAAATCACCAAAGAAGCCCCTAACTACCGCGTAGGCTGAGGCTTc                                   >  2:315734/1‑150 (MQ=255)
                                                                                                           tCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCAACGTGCACGACGTGCAAATCACCAAAGAAGCCCCTAACTACCGCGTAGGCTGAGGCTTc                                   >  1:74370/1‑150 (MQ=255)
                                                                                                            ccATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGCAAATCACCAAAGAAGCCCCTAACTACCGCGTAGGCTGAGGCTTcc                                  <  2:955906/150‑1 (MQ=255)
                                                                                                              aTGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGCAAATCACCAAAGAAGCCACTAACTACCGCGTAGGCTGAGGCTTCCAg                                >  2:782442/1‑150 (MQ=255)
                                                                                                                gggCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGCAAATCACCAAAGAAGCCCCTAACTACCGCGTAGGCTGAGGCTTCCAGCt                              <  1:875327/150‑1 (MQ=255)
                                                                                                                    tACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGAACATGACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGCAAATCACCAAAGAAGCCCCTAACTACCGCGTAGGCTGAGGCTTCCAGCTacaa                          >  2:1122378/1‑150 (MQ=255)
                                                                                                                       acCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGCAAATCACCAAAGAAGCCCCTACCTACCGCGTAGGCTGAGGCTTCCAGCTACAACAt                       >  1:175508/1‑150 (MQ=255)
                                                                                                                       acCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGCAAATCACCAAAGAAGCCCCTAACTACCGCGTAGGCTGAGGCTTCCAGCTACAACAt                       <  2:630852/150‑1 (MQ=255)
                                                                                                                        ccGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGCGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGCAAATCACCAAAGAAGCCCCTAACTACCGCGTAGGCTGAGGCTTCCAGCTACAACATa                      >  2:70003/1‑150 (MQ=255)
                                                                                                                              gcgcAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGCAAATCACCAAAGAAGCCCCTAACTACCGCGTATGCTGAGGCTTCCAGCTACAACATAAAGCgg                >  2:595705/1‑150 (MQ=255)
                                                                                                                              gcgcAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCAACGTGCACGACGTGCAAATCACCAAAGAAGCCCCTAACTACCGCGTAGGCTGAGGCTTCCAGCTACAACATAAAGCgg                <  2:74370/150‑1 (MQ=255)
                                                                                                                                gcAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGCGCCGCCATGGACGAGTCCCTCCTGTTCGATGTGCATCTCTTCGACGCATTCCGTATCTTCCGCGTAGGCTGAGGCTTCCAGCTACAACATAAAGCgggg              <  2:971444/150‑1 (MQ=255)
                                                                                                                                atgccggcaccggtgATGCGCACGAACTCCGGCTTGGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGCACATCACCAAAGAAGCCCCTAACTACCGCGTAGGCTGAGGCTTCCAGCTACAACATAAAGCgggg              <  1:603361‑M1/135‑1 (MQ=255)
                                                                                                                                  aaCCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCa                                                                                             <  1:209998/69‑1 (MQ=255)
                                                                                                                                  aaCCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCa                                                                                             >  2:209998/1‑69 (MQ=255)
                                                                                                                                  aaCCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGCAAATCACCAAAGAAGCCCCTAACTACCGCGTAGGCTGAGGCTTCCAGCTACAACATAAAGCGGGGCt            <  1:257449/150‑1 (MQ=255)
                                                                                                                                  aaCCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGCAAATCACCAAAGAAGCCCCTAACTACCGCGTAGGCTGAGGCTTCCAGCTACAACATAAAGCGGGGCt            >  1:52891/1‑150 (MQ=255)
                                                                                                                                       tCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGCAAATCACCAAAGAAGCCCCTAACTACCGCGTAGGCTGAGGCTTCCAGCTACAACATAAAGCGGGGCTGTCAt       <  2:747354/150‑1 (MQ=255)
                                                                                                                                       tCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGCAAATCACCAAAGAAGCCCCTAACTACCGCGTAGGCTGAGGCTTCCAGCTACAACATAAAGCGGGGCTGTCAt       <  2:175508/150‑1 (MQ=255)
                                                                                                                                          aagaaACGCGCACCAAGCAGGAGCTCGTGCGCATCACCGGTACAGGCATGGCCGAGTCCCACGTGCACGACGTGCAAATCACCAAAGAAGCCCCTAACTACCGCGTAGGCTGAGGCTTCCAGCTACAACATAAAGCGGGGCTGTCATGAc    <  2:336208/150‑1 (MQ=255)
                                                                                                                                            gaaATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGCAAATCACCAAAGAAGCCCCTAACTACCGCGTAGGCTGAGGCTTCCAGCTACAACATAAAGCGGGGCTGTCATGACAg  <  2:374122/150‑1 (MQ=255)
                                                                                                                                               |                                                                                                                                                  
CCTCGGCCGGCGCCGAGAAGCTGGTACCGGAAGGCATCGAAGGCCGCGTTCCTTACAAAGGCGCCCTGGCCGCGATCATCCACCAGCTGATGGGCGGCCTGCGTTCGTCCATGGGCTACACCGGCAGCGCAACCATCGAAGAAATGCGCACCAAGCCGGAGTTCGTGCGCATCACCGGTGCCGGCATGGCCGAGTCCCACGTGCACGACGTGCAAATCACCAAAGAAGCCCCTAACTACCGCGTAGGCTGAGGCTTCCAGCTACAACATAAAGCGGGGCTGTCATGACAG  >  NC_002947/1176795‑1177084

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.