New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1483154	35 (0.810)	4 (0.100)	4/246	NT	11.0%	coding (321/1029 nt)	yhdW	amino acid ABC transporter‑binding protein YhdW
	?	NC_002947	= 1483186	31 (0.740)					coding (353/1029 nt)	yhdW	amino acid ABC transporter‑binding protein YhdW

TCGTCGGCATCGATGCCGATGTCTGCCGCGCCGTGGCCGCCGCCGTGTTCGGCGATGCCACCAAGGTCAAGTTCAGCCAGCTCAACGCCAAGGAACGCTTCACTGCCCTGCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGCATGGGCCTGGTGTTCGCGGGTGTCACCTACTATGACGGCGTCGGCTTCCTGGTCAACAAGAAGCTCGGCGTTTCCAGCGCCAAGGAGCTCGATGGCGCGACCATCTGCATCCAGGCCGGCACCA  >  NC_002947/1483006‑1483302                                                                                                                                                     |                                                                                                                                                     tcgtcgGCATCGATGCCGATGTCTGCCGCGCCGTGGCCGCCGCCGTGTTCGGCGATGCCACCAAGGTCAAGTTCAGCCAGCTCAACGCCAAGGAACGCTTCACTGCCCTGCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCACCt                                                                                                                                                     <  2:85513/150‑1 (MQ=255)     cgGCATCGATGCCGATGTCTGCCGCGCCGTGGCCGCCGCCGTGTTCGGCGATGCCACCAAGGTCAAGTTCAGCCAGCTCAACGCCAAGGAACGCTTCACTGCCCTGCAGTCGGGCGATGTCGACGTACTGTCGCGTAACACCACCTGGAc                                                                                                                                                 <  1:820394/150‑1 (MQ=255)         aTCGATGCCGATGTCTGCCGCGCCGTGGCCGCCGCCGTGTTCGGCGATGCCACCAAGGTCAAGTTCAGCCAGCTCAACGCCAAGGAACGCTTCACTGCCCTGCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCACCTGGACCAGc                                                                                                                                             >  2:822850/1‑150 (MQ=255)            gATGCCGATGTCTGCCGCGCCGTGGCCGCCGCCGTGGGCGGCGATGCCACCAAGGTCAAGTTCAGCCAGCTCAACGCCAAGGAACGCTTCACTGCCCTGCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCACCTGGACCAGCTcg                                                                                                                                          >  1:88150/1‑150 (MQ=255)                 cGATGTCTGCCGCGCCGTGGCCGCCGCCGTGTTCGGCGATGCCACCAAGGTCAAGTTCAGCCAGCTCAACGCCAAGGATCGCTTCACTGCCCTGCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCTCCTGGACCAGCTCGCGCGa                                                                                                                                     <  2:16688/150‑1 (MQ=255)                      tCTGCCGCGCCGTGGCCGCCGCCGTGTTCGGCGATGCCACCAAGGTCAAGTTCAGCCAGCTCAACGCCAAGGAACGCTTCACTGCCCTGCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCg                                                                                                                                <  2:247782/150‑1 (MQ=255)                        tGCCGCGCCGTGGCCGCCGCCGTGTTCGGCGATGCCACCAAGGTCAAGTTCAGCCAGCTCAACGCCAAGGAACGCTTCACTGCCCTGCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGc                                                                                                                              >  1:880743/1‑150 (MQ=255)                            gcgcCGTGGCCGCCGCCGTGTTCGTCGATGCCACCAAGGTCAAGTTCAGCCAGCTCAACGCCACGGAACGCTTCACTGCCCTGCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGCATgg                                                                                                                          <  2:562705/150‑1 (MQ=255)                               ccGTGGCCGCCGCCGTGTTCGGCGATGCCACCAAGGTCAAGTTCAGCCAGCTCAACGCCAAGGAACGCTTCACTGCCCTGCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGCATGGGcc                                                                                                                       <  1:558876/150‑1 (MQ=255)                                cGTGGCCGCCGCCGTGTTCGGCGATGCCACCAAGGTCAAGTTCAGCCAGCTCAACGCCAAGGAACGCTTCACTGCCCTGCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGCATGGGCCt                                                                                                                      >  1:154201/1‑150 (MQ=255)                                  tGGCCGCCGCCGTGTTCGGCGATGCCACCAAGGTCAAGTCCAGCCAGCTCAACGCCAAGGAACGCTTCACTGCCCTGCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGCATGGGCCTgg                                                                                                                    >  1:1024008‑M2/1‑148 (MQ=255)                                   ggCCGCCGCCGTGTTCGGCGATGCCACCAAGGTCAAGTTCAGCCAGCTCAACGCCAAGGAACGCTTCACTGCCCTGCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGCATGGGCCTggt                                                                                                                   >  1:427685‑M2/1‑147 (MQ=255)                                   ggCCGCCGCCGTGTTCGGCGATGCCACCAAGGTCAAGTTCAGCCAGCTCAACGCCAAGGAACGCTTCACTGCCCTGCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGCATGGGCCTggt                                                                                                                   >  1:822850‑M2/1‑147 (MQ=255)                                      cgccgccgTGTTCGGCGATGCCACCAAGGTCAAGTTCAGCCAGCTCAACGCCAAGGAACGCTTCACTGCCCTGACGTGAGACGGGGTCGACGTACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGCATGGGCCTGGTGtt                                                                                                                >  1:134297/1‑150 (MQ=255)                                          gccgTGTTCGGCGATGCCACCAAGGTCAAGTTCAGCCAGCTCAACGCCAAGGAACGCTTCACTGCCCTGCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGCATGGGCCTGGTGTTcgcg                                                                                                            >  2:325005/1‑150 (MQ=255)                                               gtTCGGCGATGCCACCAAGGTCAAGTTCAGCCAGCTCAACGCCAAGGCACGCTTCACTGCCCTGCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCGCCTGTACCAGCTCGCGCGATGCCGGCATGGGCCTGGTGTTCGCGGgtgt                                                                                                       <  1:757840/150‑1 (MQ=255)                                                ttCGGCGATGCCACCAAGGTCAAGTTCAGCCAGCTCAACACCAAGGAACGCTTAACTGCCCTGCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGCATGGGCCTGGTGTTCGCGGGTGTc                                                                                                      >  1:413202/1‑150 (MQ=255)                                                      gATGCCACCAAGGTCAAGTTCAGCCAGCTCAACGCCAAGGAACGCTTCACTGCCCTGCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGCATGGGCCTGGTGTTCGCGGGTGTCACctac                                                                                                <  1:178476/150‑1 (MQ=255)                                                        tGCCACCAAGGTCAAGTTCAGCCAGCTCAACGCCAAGGAACGCTTCACTGCCCTGCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGCATGGGCCTGGTGTTCGCGGGTGTCACctacta                                                                                              <  2:880743/150‑1 (MQ=255)                                                         gCCACCAAGGTCAAGTTCAGCCAGCTCAACGCCAAGGAACGCTTCACTGCCCTGCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCACCTGGACCAGCTCGCCCGATGCCGGCATGGGCCTGGTGTTCGCGGGTGTCACCTACTAt                                                                                             <  2:460283/150‑1 (MQ=255)                                                           caccaAGGTCAAGTTCAGCCAGCTCAACGCCAAGGAACGCTTCACTGCCCTGCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCACCaggcccatgccggcatcgcgcgagctggtccagg                                                                                                                    >  2:628657‑M1/1‑91 (MQ=255)                                                           caccaAGGTCAAGTTCAGCCAGCTCAACGCCAAGGAACGCTTCACTGCCCTGCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCACCaggcccatgccggcatcgcgcgagctggtccagg                                                                                                                    <  1:628657‑M1/125‑35 (MQ=255)                                                            accaAGGTCAAGTTCAGCCAGCTCAACGCCAAGGAACGCTTCACTGCCCTGCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGCATGGGCCTGGTGTTCGCGGGTGTCACCTACTATGAc                                                                                          >  1:195995/1‑150 (MQ=255)                                                                  gTCAAGTTCAGCCAGCTCAACGCCAAGGAACGCTTCACTGCCCTGCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGCATGGGCCTGGTGTTCGCGGGTGTCACCTACTATGACGGCGTc                                                                                    >  2:299834/1‑150 (MQ=255)                                                                           agccagcTCAACGCCAAGGAACGCTTCACTGCCCTGCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGCATGGGCCTGGTGTTCGCGGGTGTCACCTACTATGACGGCGTCGGCTTCCTg                                                                           <  2:154201/150‑1 (MQ=255)                                                                              cagcTCAACGCCAAGGAACGCTTCACTGCCCTGCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCACC                                                                                                                                                      <  2:975653‑M1/72‑1 (MQ=255)                                                                              cagcTCAACGCCAAGGAACGCTTCACTGCCCTGCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCACC                                                                                                                                                      >  1:975653‑M1/1‑72 (MQ=255)                                                                                               aCGCTTCACTGCCCTGCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCGCCaggcccatgccggcatcgcgcgagctggtccaggtg                                                                                                                  <  2:1130836‑M1/91‑37 (MQ=255)                                                                                               aCGCTTCACTGCCCTGCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCGCCaggcccatgccggcatcgcgcgagctggtccaggtg                                                                                                                  >  1:1130836‑M1/1‑55 (MQ=255)                                                                                                 gCTTCACTGCCCTGCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGCATGGGCCTGGTGTTCGCGGGTGTCACCTACTATGACGGCGTCGGCTTCCTGGTCAACAAGAAGCTCGGCGttt                                                     <  2:88150/150‑1 (MQ=255)                                                                                                            cTGCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGCATGGGCCTGGTGTTCGCGGGTGTCACCTACTATGACGGCGTCGGCTTCCTGGTCAACAAGAAGCTCGGCGTTTCCAGCGCCAAg                                          <  1:325005/150‑1 (MQ=255)                                                                                                             gactgcagggCGAGGTCGACGTACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGCATGGGCCTGGTGTTCGCGGGTGTCACCTACTATGGAGGCGTCGGCTTCCTGGTCAACAAGAAGCTCGGCGTTTCCAGCGCCAAgg                                         <  1:758581/143‑1 (MQ=255)                                                                                                              gCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGCATGGGCCTGGTGTTCGCGGGTGTCACCTACTATGACGGCGTCGGCTTCCTGGTc                                                                        <  2:1033367/118‑1 (MQ=255)                                                                                                              gCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGCATGGGCCTGGTGTTCGCGGGTGTCACCTACTATGACGGCGTCGGCTTCCTGGTc                                                                        >  1:1033367/1‑118 (MQ=255)                                                                                                                aGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGCATGGGCCTGGTGTTCGCGGGTGTCACCTACTATGACGGCGTCGGCTTCCTGGTCAACAAGAAGCTCGGCGTTTCCAGCGCCAAGGAGc                                      >  2:848493/1‑150 (MQ=255)                                                                                                                      gCGAGGTCGACGTACTGTCGCGTAACACCCCCTGGACCAGCTCGCGCGATGCTGGCATGGGCCTGGTGTTCGCGGGTGTCACCTACTATGACGGCGTCGGCTTCCTGGTCAACAAGAAGCTCGGCGTTTCCAGCGCCAAGGAGCTCGATg                                <  2:180454/150‑1 (MQ=255)                                                                                                                       cGAGGTCGACGTACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGCATGGGCCTGGTGTTCGCGGGTGTCACCTACTATGACGGCGTCGGCTTCCTGGTCAACAAGAAGCTCGGCGTTTCCAGCGCCAAGGAGCTCGATgg                               <  2:195995/150‑1 (MQ=255)                                                                                                                               aCGTACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGCATGGGCCTGGTGTTCGCGGGTGTCACCTACTATGACGGCGTCGGCTTCCTGGTCAACAAGAAGCTCGGCGTTTCCAGCGCCAAGGAGCTCGATGgcgc                            >  1:886828/1‑145 (MQ=255)                                                                                                                               aCGTACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGCATGGGCCTGGTGTTCGCGGGTGTCACCTACTATGACGGCGTCGGCTTCCTGGTCAACAAGAAGCTCGGCGTTTCCAGCGCCAAGGAGCTCGATGgcgc                            <  2:886828/145‑1 (MQ=255)                                                                                                                                 gTACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGCATGGGCCTGGTGTTCGCGGGTGTCACCTACTATGACGGCGTCGGCTTCCTGGTCAACAAGAAGCTCGGCGTTTCCAgc                                                >  1:705358/1‑123 (MQ=255)                                                                                                                                 gTACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGCATGGGCCTGGTGTTCGCGGGTGTCACCTACTATGACGGCGTCGGCTTCCTGGTCAACAAGAAGCTCGGCGTTTCCAgc                                                >  1:705635/1‑123 (MQ=255)                                                                                                                                 gTACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGCATGGGCCTGGTGTTCGCGGGGGTCACCTACTATGACGGCGTCGGCTTCCTGGTCAACAAGAAGCTCGGCGTTTCCAgc                                                <  2:705635/123‑1 (MQ=255)                                                                                                                                 gTACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGCATGGGCCTGGTGTTCGCGCGTGTCACCTACTATGACGGCGTCGGCTTCCTGGTCAACAAGAAGCTCGGCGTTTCCAgc                                                <  2:705358/123‑1 (MQ=255)                                                                                                                                  tACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGCCTGGGCCTGGTGTTCGCGGGTGTCACCTACTATGACGGCGTCGGCTTCCTGGACCTGTGGAAGCTCGGCGTTTCCAGCGCCAAGGAGCTCGATGGCGCGACCATCt                    <  1:577494/150‑1 (MQ=255)                                                                                                                                  tACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGCATGGGCCTGGTGTTCGCGGGTGTCACCTACTATGACGGCGTCGGCTTCCTGGTCAACAAGAAGCTCGGCGTTTCCAGCGCCAAGGAGCTCGATGGCGCGACCATCt                    <  1:398312/150‑1 (MQ=255)                                                                                                                                           gTAACACCACCTGGACCAGCTCGCGCGATGCCGGCATGGGCCTGGTGTTCGCGGGTGTCACCTACTATGACGGCGTCGGCTTCCTGGTCAACAAGAAGATCCTCGTATCCAGCGCCAAGGAGCTCGATGGCGCGACCATCTGCATCCAgg           >  2:30291/1‑150 (MQ=255)                                                                                                                                                  caccTGGACCAGCTCGCGCGATGCCGGCATGGGCCTggcggtgttacgcgacagtacgtcgacctcgcccgactgcagggcagtgaagcgt                                                               >  1:1130836‑M2/1‑36 (MQ=255)                                                                                                                                                  caccTGGACCAGCTCGCGCGATGCCGGCATGGGCCTggcggtgttacgcgacagtacgtcgacctcgcccgactgcagggcagtgaagcgt                                                               <  2:1130836‑M2/91‑56 (MQ=255)                                                                                                                                                   accaggcccatgccggcatcgcgcgagctggtccaggtggtgttacgcgacagtacgtcgacctcgcccgactgcagggcagtgaagcgttccttggcgttgagctggctgaacttgaccttggtggcatcgccgaacacggcggcggcc   >  1:427685‑M1/1‑3 (MQ=255)                                                                                                                                                   accaggcccatgccggcatcgcgcgagctggtccaggtggtgttacgcgacagtacgtcgacctcgcccgactgcagggcagtgaagcgttccttggcgttgagctggctgaacttgaccttggtggcatcgccgaacacggcggcggcc   >  1:822850‑M1/1‑3 (MQ=255)                                                                                                                                                    ccaggcccatgccggcatcgcgcgagctggtccaggtggtgttacgcgacagtacgtcgacctcgcccgactgcagggcagtgaagcgttccttggcgttgagctggctggacttgaccttggtggcatcgccgaacacggcggcggcca  >  1:1024008‑M1/1‑2 (MQ=255)                                                                                                                                                    ccTGGACCAGCTCGCGCGATGCCGGCATGGGCCTggtggtgttacgcgacagtacgtcgacctcgcccgactgcagggcagtgaagcgttccttggcgttgagctggctgaacttgaccttggtg                           >  2:628657‑M2/1‑34 (MQ=255)                                                                                                                                                    ccTGGACCAGCTCGCGCGATGCCGGCATGGGCCTggtggtgttacgcgacagtacgtcgacctcgcccgactgcagggcagtgaagcgttccttggcgttgagctggctgaacttgaccttggtg                           <  1:628657‑M2/125‑92 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TCGTCGGCATCGATGCCGATGTCTGCCGCGCCGTGGCCGCCGCCGTGTTCGGCGATGCCACCAAGGTCAAGTTCAGCCAGCTCAACGCCAAGGAACGCTTCACTGCCCTGCAGTCGGGCGAGGTCGACGTACTGTCGCGTAACACCACCTGGACCAGCTCGCGCGATGCCGGCATGGGCCTGGTGTTCGCGGGTGTCACCTACTATGACGGCGTCGGCTTCCTGGTCAACAAGAAGCTCGGCGTTTCCAGCGCCAAGGAGCTCGATGGCGCGACCATCTGCATCCAGGCCGGCACCA  >  NC_002947/1483006‑1483302

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.