New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1750150 = | 59 (1.360) | 4 (0.100) | 3/242 | NT | 6.8% | coding (128/852 nt) | PP_1549 | Cro/CI family transcriptional regulator |
? | NC_002947 | 1750197 = | 54 (1.310) | coding (81/852 nt) | PP_1549 | Cro/CI family transcriptional regulator | |||||
Rejected: Coverage evenness skew score above cutoff. |
CTTACCTCTTTTGTTTGCTCTTGCTTAGCGGCCCCTTTGCGTGGTGGCTCACCCTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCTACAAGGT > NC_002947/1750009‑1750295 | cTTACCTCTTTTGTTTGCTCTTGCTTAGCGGCCCCTTTGCGTGGTGGCTCACCCTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCAc > 2:581938/1‑150 (MQ=255) ccTCTTTTGTTTGCTCTTGCTTAGCGTCCCCTTTGCGTGGTGGCTCACCCTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGc < 2:1106425/150‑1 (MQ=255) ccTCTTTTGTTTGCTCTTGCTTAGCGGCCCCTTTGCGTGGTGGCTCACCCTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGc > 2:1109764/1‑150 (MQ=255) tctTTTGTTTGCTCTTGCTTAGCGGCCCCTTTGCGTGGTGGCTCACCCTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCgg > 1:155564/1‑150 (MQ=255) tctTTTGTTTGCTCTTGCTTAGCGGCCCCTTTGCGTGGTGGCTCACCCTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTATTGATGTTCTCGCAATCTCCGGCGAACCACtagaag > 1:1077354/1‑145 (MQ=255) ctTTTGTTTGCTCTTGCTTAGCGGCCCCTTTGCGTGGTGGCTCACCCTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGa < 2:917015/150‑1 (MQ=255) ttttGTTTGCTCTTGCTTAGCGGCCCCTTTGCGTGGTGGCTCACCCTTCCCAGACAAAAGCCAATCAACAGTCGTATAATCACCCTCGGCTAGCGCGACGAGGTTTTCGTACCTGATGATCTCGCGTTTGCCGGCGAACCACTGGCGGAc > 1:748310/1‑150 (MQ=255) tttgCTCTTGCTTAGCGGCCCCTTTGCCATGTGGCTCACCCTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCt > 1:476416/1‑150 (MQ=255) gCTCTTGCTTAGCGGCCCCTTTGCGTGGTGGCTCACCCTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGACATGTTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCAt > 1:851713/1‑150 (MQ=255) tctTGCTTAGCGGCCCCTTTGCGTGGTGGCTCACCCTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAg < 2:20903/150‑1 (MQ=255) ttGCTTAGCGGCCCCTTTGCGTGGTGGCTCACCCTTCCCAGACAAAAGCCAATCACTAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCt < 1:739118/150‑1 (MQ=255) gCTTAGCGGCCCCTTTGCGTGGTGGCTCACCCTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGa < 2:611874/150‑1 (MQ=255) gCTTAGCGGCCCCTTTGCGTGGTGGCTCACCCTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGa > 1:250888/1‑150 (MQ=255) gCTTAGCGGCCCCTTTGCGTGGTGGCTCACCCTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGATAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGa < 2:337315/150‑1 (MQ=255) gCTTAGCGGCCCCTGTGCGTGGTGGCTCACCCTTCCCATACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATTGCTGa < 2:918416/150‑1 (MQ=255) ttAGCGGCCCCTTTGCGTGGAGGCTCACCCTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGAtt > 1:563262/1‑150 (MQ=255) gCGGCCCCTTTGCGTGGTGGCTCACCCTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTCTTCCCCCTGGGTGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCg > 2:151035/1‑150 (MQ=255) cccTTTGCGTGGTGGCTCACCCTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGgt > 1:137787/1‑150 (MQ=255) cccTTTGCGTGGTGGCTCACCCTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGgt > 2:149880/1‑150 (MQ=255) cTTTGCGTGGTGGCTCACCCTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGgtgt > 2:1124042/1‑150 (MQ=255) gtggtgGCTCACCCTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGa > 1:781758/1‑150 (MQ=255) tCACCCTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGt > 2:98585/1‑150 (MQ=255) cACCCTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGaa > 2:547988/1‑97 (MQ=255) cACCCTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGaa < 1:547988/97‑1 (MQ=255) cACCCTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGtt < 2:748310/150‑1 (MQ=255) ccTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTGCTCAGGTGTTCGCGATGTCGCGTTTGa > 1:840771/1‑150 (MQ=255) ccTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGa > 2:378879/1‑150 (MQ=255) cAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGc < 1:218892/150‑1 (MQ=255) cAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATCTCGCGTTTGACATTGc > 2:101630/1‑150 (MQ=255) aGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCg > 2:1022789/1‑150 (MQ=255) aaGCCAAGCAACAGTCGTGTCGTCGCCATAGGAATGCCAGTCGTGTTGTCCCTTCTTGAGGTGCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGcc < 2:851713/150‑1 (MQ=255) ccAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCaa > 2:786202/1‑150 (MQ=255) ccAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCaa > 1:46002/1‑150 (MQ=255) tCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGcc < 2:400526/90‑1 (MQ=255) tCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGcc > 1:400526/1‑90 (MQ=255) tCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACtgt < 1:880366/150‑1 (MQ=255) tCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACtgt < 2:137787/150‑1 (MQ=255) aCAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTggg < 2:823559/150‑1 (MQ=255) cAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGc < 2:840771/150‑1 (MQ=255) gtAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAg > 2:917768/1‑150 (MQ=255) aGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCGCAACTGTGGGCGACGGGTCAGGa < 1:581938/150‑1 (MQ=255) ccTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGa < 2:900692/150‑1 (MQ=255) tCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTcg > 1:529054/1‑94 (MQ=255) tCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTcg < 2:529054/94‑1 (MQ=255) cTAGCGTGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTgg < 1:668797/150‑1 (MQ=255) cTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTgg > 1:400568/1‑150 (MQ=255) tAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGt < 1:786202/150‑1 (MQ=255) cgcgACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGAt < 2:563262/150‑1 (MQ=255) cgaGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGAt < 2:250888/150‑1 (MQ=255) cgaGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGAt < 1:506487/150‑1 (MQ=255) gTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGcc > 2:586475/1‑52 (MQ=255) gTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGcc < 1:586475/52‑1 (MQ=255) gTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCagt > 1:557188/1‑150 (MQ=255) ttCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTc > 2:693415/1‑150 (MQ=255) cTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCAt > 2:815611/1‑150 (MQ=255) tGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGttt > 2:991249/1‑79 (MQ=255) tGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGttt < 1:991249/79‑1 (MQ=255) aTGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTcgc < 1:378879/150‑1 (MQ=255) gTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCgcgc < 2:400568/150‑1 (MQ=255) cGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCGGATTCGCGACGTATTGGCGATGTCGCGTTTGACAATGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCt < 1:805821/150‑1 (MQ=255) gTATCTCCGGCGAACCACTGGCGGAAAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGCCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCTAc > 1:821313/1‑150 (MQ=255) tcCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCTACAAGGt > 2:615831/1‑150 (MQ=255) tcCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCTACAAGGt > 2:1048837/1‑150 (MQ=255) | CTTACCTCTTTTGTTTGCTCTTGCTTAGCGGCCCCTTTGCGTGGTGGCTCACCCTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCTACAAGGT > NC_002947/1750009‑1750295 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |