New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1750150 = | 59 (1.360) | 4 (0.100) | 3/242 | NT | 6.8% | coding (128/852 nt) | PP_1549 | Cro/CI family transcriptional regulator |
? | NC_002947 | 1750197 = | 54 (1.310) | coding (81/852 nt) | PP_1549 | Cro/CI family transcriptional regulator | |||||
Rejected: Coverage evenness skew score above cutoff. |
GTGGTGGCTCACCCTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCTACAAGGTTGCTTGTCAAGCATGCTTGTTTTGAATATGCAAGCATGCTTGAATGCCT > NC_002947/1750049‑1750344 | gtggtgGCTCACCCTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGa > 1:781758/1‑150 (MQ=255) tCACCCTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGt > 2:98585/1‑150 (MQ=255) cACCCTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGtt < 2:748310/150‑1 (MQ=255) ccTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTGCTCAGGTGTTCGCGATGTCGCGTTTGa > 1:840771/1‑150 (MQ=255) ccTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGa > 2:378879/1‑150 (MQ=255) cAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGc < 1:218892/150‑1 (MQ=255) cAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATCTCGCGTTTGACATTGc > 2:101630/1‑150 (MQ=255) aGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCg > 2:1022789/1‑150 (MQ=255) aaGCCAAGCAACAGTCGTGTCGTCGCCATAGGAATGCCAGTCGTGTTGTCCCTTCTTGAGGTGCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGcc < 2:851713/150‑1 (MQ=255) ccAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCaa > 2:786202/1‑150 (MQ=255) ccAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCaa > 1:46002/1‑150 (MQ=255) tCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACtgt < 1:880366/150‑1 (MQ=255) tCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACtgt < 2:137787/150‑1 (MQ=255) aCAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTggg < 2:823559/150‑1 (MQ=255) cAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGc < 2:840771/150‑1 (MQ=255) gtAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAg > 2:917768/1‑150 (MQ=255) aGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCGCAACTGTGGGCGACGGGTCAGGa < 1:581938/150‑1 (MQ=255) ccTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGa < 2:900692/150‑1 (MQ=255) cTAGCGTGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTgg < 1:668797/150‑1 (MQ=255) cTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTgg > 1:400568/1‑150 (MQ=255) tAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGt < 1:786202/150‑1 (MQ=255) cgcgACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGAt < 2:563262/150‑1 (MQ=255) cgaGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGAt < 1:506487/150‑1 (MQ=255) cgaGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGAt < 2:250888/150‑1 (MQ=255) gTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCagt > 1:557188/1‑150 (MQ=255) ttCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTc > 2:693415/1‑150 (MQ=255) cTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCAt > 2:815611/1‑150 (MQ=255) tGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGttt < 1:991249/79‑1 (MQ=255) tGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGttt > 2:991249/1‑79 (MQ=255) aTGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTcgc < 1:378879/150‑1 (MQ=255) gTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCgcgc < 2:400568/150‑1 (MQ=255) cGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCGGATTCGCGACGTATTGGCGATGTCGCGTTTGACAATGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCt < 1:805821/150‑1 (MQ=255) gTATCTCCGGCGAACCACTGGCGGAAAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGCCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCTAc > 1:821313/1‑150 (MQ=255) tcCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCTACAAGGt > 2:615831/1‑150 (MQ=255) tcCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCTACAAGGt > 2:1048837/1‑150 (MQ=255) cGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATCTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCTACAAGGTTGCtt < 1:101630/150‑1 (MQ=255) aCCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCTACAAGGTTGCTTGTc < 1:98585/150‑1 (MQ=255) ccACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCTACAAGGTTGCTTGTCa < 1:815611/150‑1 (MQ=255) cACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGAtt > 2:963131/1‑105 (MQ=255) cACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGAtt < 1:963131/105‑1 (MQ=255) cTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTgg < 1:384397/98‑1 (MQ=255) cTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTgg > 2:384397/1‑98 (MQ=255) gCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCTACAAGGTTGCTTGTCAAGCATg < 1:1109764/150‑1 (MQ=255) ccTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCTACAAGGTTGCTTGTCAAGCATGCTTGtttt > 1:751008/1‑150 (MQ=255) ccTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCTACAAGGTTGCTTGTCAAGCATGCTTGtttt > 1:937089/1‑150 (MQ=255) tCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCTa > 2:537364/1‑119 (MQ=255) tCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCTa < 1:537364/119‑1 (MQ=255) aTAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTgg > 2:316044/1‑83 (MQ=255) aTAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTgg < 1:316044/83‑1 (MQ=255) tAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCTACAAGGTTGCTTGTCAAGCATGCTTGTTTTGAata < 1:1124042/150‑1 (MQ=255) gATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCTACAAGGTTGCTTGTCAAGCATGCTTGTTTTGAATATGCaa > 2:518650/1‑150 (MQ=255) gATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCTACAAGGTTGCTTGTCAAGCATGCTTGTTTTGAATATGCaa < 1:429752/150‑1 (MQ=255) aTTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCTACAAGGTTGCTTGTCAAGCATGCTTGTTTTGAATATGCAAg > 2:1066544/1‑150 (MQ=255) ttCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCTACAAGGTTGCTTGTCAAGCATGCTTGTTTTGAATATGCAAGc < 1:326983/150‑1 (MQ=255) tCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCTACAAGGTTGCTTGTCAAGCATGCTTGTTTTGAATATGCAAGCa < 1:1022789/150‑1 (MQ=255) gaaGGTGTTCGCGGTGGCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCTACAAGGTTGCTTGTCAAGCATGCTTGTTTTGAATATGCAAGCATGc > 2:1066488/3‑150 (MQ=255) aGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCTACAAGGTTGCTTGTCAAGCATGCTTGTTTTGAATATGCAAGCATGCtt < 1:518650/150‑1 (MQ=255) aGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCTACAAGGTTGCTTGTCAAGCATGCTTGTTTTGAATATGCAAGCATGCt > 2:183484/1‑149 (MQ=255) aGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCTACAAGGTTGCTTGTCAAGCATGCTTGTTTTGAATATGCAAGCATGCt < 1:183484/149‑1 (MQ=255) gtTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCTACAAGGTTGCTTGTCAAGCATGCTTGTTTTGAATATGCAAGCATGCTTGAAt < 2:937089/150‑1 (MQ=255) gtTCGCGATGTCGCGTTTCGCATTGCGATTGCTCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCTACAAGGTTGCTTGTCAAGCATGCTTGTTTTGAATATGCAAGCATGCTTGAAt < 1:335668/150‑1 (MQ=255) gcgATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGCCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCTACAAGGTTGCTTGTCAAGCATGCTTGTTTTGAATATGCAAGCATGCTTGAATGCCt < 2:821313/150‑1 (MQ=255) | GTGGTGGCTCACCCTTCCCAGACAAAAGCCAATCAACAGTCGTGTCGTAGCCCTCGGCTAGCGCGACGAGGTTTTCGTTCTTGATGTTCTCGGTATCTCCGGCGAACCACTGGCGGACAGCCTCATAGCTGATTCCGCAGGTGTTCGCGATGTCGCGTTTGACATTGCGAACGCCCAACTGTGGGCGACGGGTCAGGACGAGTTTGGTGATTCGATCAGTAGTTTTCATTCGCGCAATCTACAAGGTTGCTTGTCAAGCATGCTTGTTTTGAATATGCAAGCATGCTTGAATGCCT > NC_002947/1750049‑1750344 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |