| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2136209 = | 30 (0.690) | 6 (0.150) | 6/242 | NT | 18.3% | coding (585/2448 nt) | fadE | medium‑long chain acyl‑CoA dehydrogenase |
| ? | NC_002947 | 2136231 = | 25 (0.610) | coding (563/2448 nt) | fadE | medium‑long chain acyl‑CoA dehydrogenase | |||||
TGAGGGCGAAACAGGGGATTTCCTCGCCACGGGCCAGGCGCGGCAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGTCCAGATCCTGGCC > NC_002947/2136064‑2136349 | gcgccatggtcagcgactggcagattggccaggatctgggcctgccgcccgaagcctgggcacatatcaagcaacatggctttttcgccctgatcatccccaaggaatacggcggcaagggcttctccgcctacgcccactcccaGGTgg > 2:67576‑M1/146‑150 (MQ=255) gCGAAACAGGGGATTTCCTCGCCACGGGCCAGGCGCGGCAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑Gc < 1:413642/150‑1 (MQ=255) aaaCAGGGGATTTCCTCGCCACGGGCCAGGCGCGGCAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTc < 2:183807/150‑1 (MQ=255) ggggATTTCCTCGCCACGGGCCAGGCGCGGCAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGc > 2:1129701/1‑150 (MQ=255) ttCCTCGCCACGGGCCAGGCGCGGCCGTTCGATGTTGCGTTGTTCGTCGGTGCCGTAGTGGGAAAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTg > 1:308687/1‑150 (MQ=255) ttCCTCGCCACGGGCCAGGCGCGGCAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTg > 1:871329/1‑150 (MQ=255) tCCTCGCCACGGGCCAGGCGCGGCAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTgg < 1:330531/150‑1 (MQ=255) cTCGCCACGGGCCAGGCGCGGCAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGa < 2:892986/150‑1 (MQ=255) tCGCCACGGGCCAGGCGCGGCAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAg > 2:252689/1‑150 (MQ=255) tCGCCACGGGCCAGGCACGACAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAg > 2:12981/1‑150 (MQ=255) cACGGGCCAGGCGCGGCAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTggg < 1:989421/150‑1 (MQ=255) ccaggatctggacctgccgcccgaagcctgggcacatatcaagcaacatggctttttcgccctgatcatccccaaggaatacggcggcaagggcttctccgcctacgcccactcccaGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGc < 2:419813‑M1/33‑1 (MQ=255) gCCAGGCGCGGCAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCGGCAGTTCGGCAGGGCTCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGTGTGGGCGTAg > 1:387795/1‑150 (MQ=255) cAGGCGCGGCAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGc > 2:982186/1‑150 (MQ=255) gTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCtt < 2:353740/150‑1 (MQ=255) tAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGAAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTg < 2:362980/150‑1 (MQ=255) aGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTgc < 2:787751/150‑1 (MQ=255) ttgttCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCTACATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTc > 1:471967/1‑150 (MQ=255) gcacatatcaagcaacatggctttttcgccctgatcatccccaaggaatacggcggcaagggcttctccgcctacgcccactcccag < 1:720259‑M1/1‑1 (MQ=255) gcacatatcaagcaacatggctttttcgccctgatcatccccaaggaatacggcggcaagggcttctccgcctacgcccactcccag > 2:720259‑M1/87‑87 (MQ=255) cagcagcagTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGaa < 2:871329/150‑1 (MQ=255) tttttcgccctgatcatccccaaggaatacggcggcaagggcttctccgcctacgcccactcccaGGTGGCCA‑GCTTCATCGCCACCTg < 1:419960‑M1/24‑1 (MQ=255) tttttcgccctgatcatccccaaggaatacggcggcaagggcttctccgcctacgcccactcccaGGTGGCCA‑GCTTCATCGCCACCTg > 2:419960‑M1/66‑89 (MQ=255) cagcagTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGaaaaa < 2:284762/150‑1 (MQ=255) gcagTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGc > 1:493299/1‑150 (MQ=255) aGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCtt < 1:656375/150‑1 (MQ=255) gcacAGGGAGTTGGGAACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAAAAAATCCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGat < 2:709785/147‑1 (MQ=255) ggAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGc > 2:247230/1‑150 (MQ=255) gTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCa < 2:493299/150‑1 (MQ=255) gTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCa < 2:1126391/150‑1 (MQ=255) atacggcggcaagggcttctccgcctacgcccactaccaGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAg < 2:510798‑M1/46‑1 (MQ=255) atacggcggcaagggcttctccgcctacgcccactaccaGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAg > 1:510798‑M1/40‑85 (MQ=255) aCCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCg < 1:1129701/150‑1 (MQ=255) aTCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGggc > 1:373202/1‑150 (MQ=255) tCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGggcg < 2:320088/150‑1 (MQ=255) tccgcctacgcccactcccaGGTGGCGATGAAGC‑TGGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGTcc < 1:419813‑M1/130‑1 (MQ=255) cAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCTTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGTCCAGATc > 1:78173/1‑150 (MQ=255) ggTCGCCGCTCCGGGTGGTCA‑GCTTCATCGCCACCTGGGAGTGGGCGCAGGAAGCACGTTGAAGGCTGGGATGACCCGCGGCGATAAACAGGTAGAACAAGCCATGTTGGTGGATTTGTGCCCAGGCTTCGGGCGGCAGGTCCAGATCCt < 1:252689/150‑1 (MQ=255) gccgcTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGAAAAAAAAAAAAAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGTCCAGATCCTGGcc < 2:998064/150‑1 (MQ=255) | TGAGGGCGAAACAGGGGATTTCCTCGCCACGGGCCAGGCGCGGCAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGTCCAGATCCTGGCC > NC_002947/2136064‑2136349 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |