New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2136209 = | 30 (0.690) | 6 (0.150) | 6/242 | NT | 18.3% | coding (585/2448 nt) | fadE | medium‑long chain acyl‑CoA dehydrogenase |
? | NC_002947 | 2136231 = | 25 (0.610) | coding (563/2448 nt) | fadE | medium‑long chain acyl‑CoA dehydrogenase |
TTCCTCGCCACGGGCCAGGCGCGGCAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGTCCAGATCCTGGCCAATCTGCCAGTCGCTGACCATGGCGC > NC_002947/2136083‑2136375 | ttCCTCGCCACGGGCCAGGCGCGGCCGTTCGATGTTGCGTTGTTCGTCGGTGCCGTAGTGGGAAAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTg > 1:308687/1‑150 (MQ=255) ttCCTCGCCACGGGCCAGGCGCGGCAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTg > 1:871329/1‑150 (MQ=255) tCCTCGCCACGGGCCAGGCGCGGCAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTgg < 1:330531/150‑1 (MQ=255) cTCGCCACGGGCCAGGCGCGGCAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGa < 2:892986/150‑1 (MQ=255) tCGCCACGGGCCAGGCGCGGCAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAg > 2:252689/1‑150 (MQ=255) tCGCCACGGGCCAGGCACGACAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAg > 2:12981/1‑150 (MQ=255) cACGGGCCAGGCGCGGCAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTggg < 1:989421/150‑1 (MQ=255) ccaggatctggacctgccgcccgaagcctgggcacatatcaagcaacatggctttttcgccctgatcatccccaaggaatacggcggcaagggcttctccgcctacgcccactcccaGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGc < 2:419813‑M1/33‑1 (MQ=255) gCCAGGCGCGGCAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCGGCAGTTCGGCAGGGCTCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGTGTGGGCGTAg > 1:387795/1‑150 (MQ=255) cAGGCGCGGCAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGc > 2:982186/1‑150 (MQ=255) ggacctgccgcccgaagcctgggcacatatcaagcaacatggctttttcgccctgatcatccccaaggaatacggcggcaagggcttctccgcctacgcccactcccaggtggccagcttcatcgccaccTGGGAGTGGGCGTAGGCGga < 1:419813‑M2/20‑1 (MQ=255) gTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCtt < 2:353740/150‑1 (MQ=255) tAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGAAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTg < 2:362980/150‑1 (MQ=255) aGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTgc < 2:787751/150‑1 (MQ=255) ttgttCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCTACATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTc > 1:471967/1‑150 (MQ=255) cagcagcagTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGaa < 2:871329/150‑1 (MQ=255) tttttcgccctgatcatccccaaggaatacggcggcaagggcttctccgcctacgcccactcccaGGTGGCCA‑GCTTCATCGCCACCTg > 2:419960‑M1/66‑89 (MQ=255) tttttcgccctgatcatccccaaggaatacggcggcaagggcttctccgcctacgcccactcccaGGTGGCCA‑GCTTCATCGCCACCTg < 1:419960‑M1/24‑1 (MQ=255) cagcagTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGaaaaa < 2:284762/150‑1 (MQ=255) gcagTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGc > 1:493299/1‑150 (MQ=255) aGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCtt < 1:656375/150‑1 (MQ=255) gcacAGGGAGTTGGGAACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAAAAAATCCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGat < 2:709785/147‑1 (MQ=255) ggAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGc > 2:247230/1‑150 (MQ=255) gTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCa < 2:1126391/150‑1 (MQ=255) gTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCa < 2:493299/150‑1 (MQ=255) atacggcggcaagggcttctccgcctacgcccactaccaGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAg > 1:510798‑M1/40‑85 (MQ=255) atacggcggcaagggcttctccgcctacgcccactaccaGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAg < 2:510798‑M1/46‑1 (MQ=255) aCCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCg < 1:1129701/150‑1 (MQ=255) aTCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGggc > 1:373202/1‑150 (MQ=255) tCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGggcg < 2:320088/150‑1 (MQ=255) cttctccgcctacgcccactcccaggtggcgatgaagctggccaccTGGTAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTAt > 1:510798‑M2/47‑85 (MQ=255) cttctccgcctacgcccactcccaggtggcgatgaagctggccaccTGGTAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTAt < 2:510798‑M2/39‑1 (MQ=255) tccgcctacgcccactcccaGGTGGCGATGAAGC‑TGGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGTcc < 1:419813‑M1/130‑1 (MQ=255) cAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCTTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGTCCAGATc > 1:78173/1‑150 (MQ=255) ggTCGCCGCTCCGGGTGGTCA‑GCTTCATCGCCACCTGGGAGTGGGCGCAGGAAGCACGTTGAAGGCTGGGATGACCCGCGGCGATAAACAGGTAGAACAAGCCATGTTGGTGGATTTGTGCCCAGGCTTCGGGCGGCAGGTCCAGATCCt < 1:252689/150‑1 (MQ=255) gcccactcccaggtggcgatgaagctggccaccTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGTCCAGATCCTgg < 2:419813‑M2/117‑1 (MQ=255) gccgcTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGAAAAAAAAAAAAAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGTCCAGATCCTGGcc < 2:998064/150‑1 (MQ=255) caggtggcgatgaagctggccaccTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGaaaaa > 2:419960‑M2/25‑89 (MQ=255) caggtggcgatgaagctggccaccTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGaaaaa < 1:419960‑M2/65‑1 (MQ=255) a‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGTCCAGATCCTGGCCAATCTGCCAGTCGCTg < 2:471967/150‑1 (MQ=255) ttCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGATAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGTCCAGATCCTGGCCAATCTGCCAGTCGCTGAcc > 2:554386/1‑150 (MQ=255) aTCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGTCCAGATCCTGGCCAATCTGCCAGTCGCTGACCATg < 1:12981/150‑1 (MQ=255) tCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGTCCAGATCCTGGCCAATCTGCCAGTCGCTGACCATgg > 2:846325/1‑150 (MQ=255) cGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGTCCAGATCCTGGCCAATCTGCCAGTCGCTGACCATGgc < 1:890552/150‑1 (MQ=255) ccaccTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGCCCAGATCCTGGCCAATCTGCCAGTCGCTGACCATGgcgc > 2:67576‑M2/6‑150 (MQ=255) cTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGc > 2:720259‑M2/2‑87 (MQ=255) cTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGc < 1:720259‑M2/86‑1 (MQ=255) | TTCCTCGCCACGGGCCAGGCGCGGCAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGTCCAGATCCTGGCCAATCTGCCAGTCGCTGACCATGGCGC > NC_002947/2136083‑2136375 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |