New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2248271	35 (0.810)	3 (0.070)	3/244	NT	7.2%	coding (1371/3297 nt)	PP_1983	PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase
	?	NC_002947	= 2248318	44 (1.060)					coding (1324/3297 nt)	PP_1983	PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase

GCGGCTGGAAATCACACAGGTCAGCGGGTCGCCATTGCGGTGGTTGAGTACCACGGCGACGTTACTCAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCTGGAACAGGCTGGCAAACTTCTCTTCCGAGGCGCT  >  NC_002947/2248127‑2248420                                                                                                                                                 |                                                                                                                                                      gcggcTGGAAATCACACAGGTCAGCGGGTCGCCATTGCGGTGGTTGAGTACCACGGCGACGTTACTCAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACg                                                                                                                                                  >  1:797413/1‑150 (MQ=255)              acacaGGTCAGCGGGTCGCCATTGCGGTGGTTGAGTACCACGGCGACGTTACTCAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTgc                                                                                                                                     >  1:934019/1‑150 (MQ=255)                acaGGTCAGCGGGTCGCCATTGCGGTGGTTGAGTACCACGGCGACGTTACTCAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTgcgc                                                                                                                                   >  2:832855/1‑150 (MQ=255)                          gggTCGCCATTGCGGTGGTTGAGTACCACGGCGACGTTACTCAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAg                                                                                                                         <  1:241780/150‑1 (MQ=255)                           ggTCGCCATTGCGGTGGTTGAGTACCACGGCGACGTTACTCAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGc                                                                                                                        >  1:396865/1‑150 (MQ=255)                               gCCATTGCGGTGGTTGAGTACCACGGCGACGTTACTCAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGttcacccagaccttcggctggagcagcgcgcaggt                                                                                                                    >  2:896049‑M1/1‑115 (MQ=255)                                      cGGTGGTTGAGTACCACGGCGACGTTACTCAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGCCTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAACACGTGCGCTCTGCTCCAGCCGAAGGTCTgg                                                                                                             <  2:852391/150‑1 (MQ=255)                                      cGGTGGTTGAGTACCACGGCGACGTTACTCAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTgg                                                                                                             <  1:555791/150‑1 (MQ=255)                                        gtggtTGAGTACCACGGCGACGTTACTCAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGt                                                                                                           >  2:809281/1‑150 (MQ=255)                                            ttGAGTACCACGGCGACGTTACTCAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAAc                                                                                                       >  1:791428‑M2/1‑149 (MQ=255)                                            ttGAGTACCACGGCGACGTTACTCAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACGCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAAc                                                                                                       >  2:934019‑M2/1‑149 (MQ=255)                                              gAGTACCACGGCGACGTTACTCAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGttcacccagaccttcggctggagcagcgctcagctgctttggcttaccgc                                                                                                     <  2:831105‑M1/150‑51 (MQ=255)                                                 tACCACGGCGACGTTACTCAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGttcacccagaccttcggctggagcagcgcgcaggtgcttgggcgtaccgccga                                                                                                  <  1:896049‑M1/150‑54 (MQ=255)                                                            cGTTACTCAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGa                                                                                       <  1:832855/150‑1 (MQ=255)                                                              ttACTCAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATg                                                                                     >  1:610467/1‑150 (MQ=255)                                                                   cAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTg                                                                                <  2:797413/150‑1 (MQ=255)                                                                       gCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCa                                                                            <  1:409755/150‑1 (MQ=255)                                                                       gCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGCCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCa                                                                            >  2:23768/1‑150 (MQ=255)                                                                          tGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCCGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGGTGAACTGGCCAgtg                                                                         >  1:331265/1‑150 (MQ=255)                                                                          tGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGCCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAgtg                                                                         <  1:23768/150‑1 (MQ=255)                                                                               gcgGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTg                                                                    >  2:817423/1‑150 (MQ=255)                                                                                   aTCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCgt                                                                <  1:809281/150‑1 (MQ=255)                                                                                   aTCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCgt                                                                <  1:469370/150‑1 (MQ=255)                                                                                          gCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGc                                                         >  1:471751/1‑150 (MQ=255)                                                                                              gATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGAt                                                     <  1:110107/150‑1 (MQ=255)                                                                                               agaCGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGc                                                                              >  2:295448/3‑124 (MQ=255)                                                                                               aTACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGc                                                                              <  1:295448/124‑1 (MQ=255)                                                                                               aTACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGAtc                                                    <  1:1033854/150‑1 (MQ=255)                                                                                                      tCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGCGTGACGCAGAtcgggtcgg                                             <  2:610467/150‑1 (MQ=255)                                                                                                             cTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGAc                                      <  2:991100/150‑1 (MQ=255)                                                                                                               ggtgggACTCCGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCt                                    <  2:396865/146‑1 (MQ=255)                                                                                                                gACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCTg                                   <  1:95163/150‑1 (MQ=255)                                                                                                                       tCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGAtcg                                                   <  2:1042518/127‑1 (MQ=255)                                                                                                                       tCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGAtcg                                                   >  1:1042518/1‑127 (MQ=255)                                                                                                                       tCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCTGGAACAgg                            >  1:438507/1‑150 (MQ=255)                                                                                                                          gCCCACGGGCCGATTTCCTCGTCGGTACCTCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGTCCAGTGTCCTGGCGTGTGTCGCAGATCGGGTCGGGGCTTACCTGGAACAGGCTg                         <  2:373042/150‑1 (MQ=255)                                                                                                                           cccACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCTGGAACAGGCTgg                        >  1:1036286/1‑150 (MQ=255)                                                                                                                           cccACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCTGGAACAGGCTgg                        >  2:761919/1‑150 (MQ=255)                                                                                                                                  gCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCTGGAACAGGCTGGCAAACtt                 <  1:1031232/150‑1 (MQ=255)                                                                                                                                          ccTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCTGGAACAGGCTGGCAAACTTCTCTTCCg         <  1:817423/150‑1 (MQ=255)                                                                                                                                            tCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAAcgccgaggaaatcggcctgtgggccgagtccgtcgagcgcgcgaaacgtatcgagcaggtgatccgcgaacaggccttgagtaacgtcgccgtggta       <  1:896049‑M2/150‑98 (MQ=255)                                                                                                                                            tCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCTGGAACAGGCTGGCAAACTTCTCTTCCGAg       >  2:924333/1‑150 (MQ=255)                                                                                                                                               gcggTAAGCCAAAGCAGCTGAGCGCTGCTCCAGCCGAAGGTCTGGGTGAAcgccgaggaaatcggcctgtgggccgagtccgtcgagcgcgcgaaacgtatcgagcaggtgatccgcgaacaggccttgagtaacgtcgccgtggtactc    <  2:831105‑M2/150‑101 (MQ=255)                                                                                                                                                 gttcacccagaccttcggctggagcagcgcgcaggtgcttgggcgtaccgccgaggaaatcggcctgtgggccgcgtccgtcgagcgcgcgaaacgtatcgagcaggtgatccgcgaacaggccttgagtaacgtcgccgtggtactcaa  >  2:934019‑M1/1‑1 (MQ=255)                                                                                                                                                 gttcacccagaccttcggctggagcagcgcgcaggtgcttgggcgtaccgccgaggaaatcggcctgtgggccgagtccgtcgagcgcgcgaaacgtatcgagcaggtgatccgcgaacaggccttgagtaacgtcgccgtggtactcaa  >  1:791428‑M1/1‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                      GCGGCTGGAAATCACACAGGTCAGCGGGTCGCCATTGCGGTGGTTGAGTACCACGGCGACGTTACTCAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCTGGAACAGGCTGGCAAACTTCTCTTCCGAGGCGCT  >  NC_002947/2248127‑2248420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.