New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2283665 = | 49 (1.130) | 6 (0.150) | 5/242 | NT | 11.6% | coding (193/978 nt) | PP_2011 | hypothetical protein |
? | NC_002947 | 2283716 = | 45 (1.090) | coding (142/978 nt) | PP_2011 | hypothetical protein |
ATGCCTGGCGCCTGGCTCAGGGCAAATTGCCACAGGCGTTCGTAGTAATGCCCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAGCTGGGCGAATGGCGTCATC > NC_002947/2283517‑2283813 | aTGCCTGGCGCCTGGCTCAGGGCAAATTGCCACAGGCGTTCGTAGTAATGCCCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCtgctgc < 1:680965/150‑1 (MQ=255) aTGCCTGGCGCCTGGCTCAGGGCAAATTGCCACAGGCGTTCGTAGTAATGCCCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCtgctgc < 2:681445/150‑1 (MQ=255) gcgcctggcTCAGGGCAAATTGCCACAGGCGTTCGTAGTAATGCCCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCcaca > 2:751246/1‑150 (MQ=255) gcgcctggcTCAGGGCAAATGGCCACAGGCGTTCGTAGTAATGCCCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCcaca < 1:322323/150‑1 (MQ=255) cgcctggcTCAGGGCAAATTGCCACAGGCGTTCGTAGTAATGCGCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCcaccg < 2:55296/150‑3 (MQ=255) gcTCAGGGCAAATTGCCACAGGCGTTCGTAGTAATGCCCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGcc < 1:751246/150‑1 (MQ=255) ggCAAATTGCCACAGGCGTTCGTAGTAATGCCCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAg > 2:209813/1‑150 (MQ=255) ttGCCACAGGCGTTCGTAGTAATGCCCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGgtg < 1:209813/150‑1 (MQ=255) ggcaaaccggctatgctcgcaggatgacgccattcgcccagcttcacgacctgccccgacaactgcagcactccaccgtgcgtgacctggcatgggccttgttgtcgccgcccctgctcaGCGCCCACAGGCTGCCCGCCAGCGGGTGTc < 2:771391‑M1/30‑1 (MQ=255) aGGCGTTCGTAGTAATGCCCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTgg < 2:663588/150‑1 (MQ=255) cGTTCGTAGTAATGCCCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTggggg < 2:160965/150‑1 (MQ=255) gTTCGTAGTAATGCCCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAATCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGc > 2:838812/1‑150 (MQ=255) gTTCGTAGTAATGCCCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGc > 1:498601/1‑150 (MQ=255) ttCGTAGTAATGCCCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCa > 1:766693/1‑150 (MQ=255) tagtaATGCCCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGgt < 2:951591/133‑1 (MQ=255) tagtaATGCCCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGgt > 1:951591/1‑133 (MQ=255) tcgcaggatgacgccattcgcccagcttcacgacctgccccgacaactgcagcactccaccgtacgtgacctggcatgggccttgttgtcgccgcccctgctcaGCGCCC‑CGCCCTGCCCGCCAGCGGGTGTCGCTGGGGGCAgggcggg > 2:565331‑M1/105‑150 (MQ=255) taATGCCCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAgggcggg < 2:607466/150‑1 (MQ=255) tGCCCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAgggcggggcg > 1:148963/1‑150 (MQ=255) tgacgccattcgcccagcttcacgacctgccccgacaactgcagcactccaccgtgcgtgacctggcatgggccttgttgtcgccgcccctgctcaGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGa > 1:771391‑M1/97‑150 (MQ=255) tgacgccattcgcccagcttcacgacctgccccgacaactgcagcactccaccgtgcgtgacctggcatgggccttgttgtcgccgcccctgctcaGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGa > 2:109909‑M1/97‑150 (MQ=255) ccAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGa < 2:403273/150‑1 (MQ=255) ggCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCa > 2:322910/1‑150 (MQ=255) cgcCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAgg < 2:781704/150‑1 (MQ=255) cgcCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAgg < 2:348452/150‑1 (MQ=255) gCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGggcgg < 2:912114/150‑1 (MQ=255) cccAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTgg > 1:650329/1‑117 (MQ=255) cccAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTgg < 2:650329/117‑1 (MQ=255) ccAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGCGCAGGGGCGGCGaca > 1:152766/1‑150 (MQ=255) ccAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCGGGGGCGGCGaca > 2:805798/1‑150 (MQ=255) ggCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGgtgt > 2:152144/1‑94 (MQ=255) ggCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGgtgt < 1:152144/94‑1 (MQ=255) cgcgcAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGt < 1:295015/150‑1 (MQ=255) gcgcAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGG‑A‑GGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTcac < 2:441084/150‑1 (MQ=255) cAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTcacg > 1:986271/1‑150 (MQ=255) gtcATCGGCATCCAGCGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCCCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGa < 2:615690/150‑1 (MQ=255) tcATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGggcggc > 2:615175/1‑114 (MQ=255) tcATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGggcggc < 1:615175/114‑1 (MQ=255) tcATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCAt < 1:1038025/129‑1 (MQ=255) tcATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCAt > 2:1038025/1‑129 (MQ=255) tcATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAg > 2:862169/1‑150 (MQ=255) ggCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGtgctg > 1:304071/1‑150 (MQ=255) gCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGtgctgc > 2:348190/1‑150 (MQ=255) cATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCa < 2:498601/150‑1 (MQ=255) cATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCa < 1:719999/150‑1 (MQ=255) aggaaccGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGt > 2:1126655/6‑150 (MQ=255) gCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCgg < 1:322910/150‑1 (MQ=255) ctggcatgggccttgttgtcgccgcccctgctcaGCGCCCACAGGCTGCCCGCCAGCGGgtgt > 1:418159‑M1/35‑63 (MQ=255) ctggcatgggccttgttgtcgccgcccctgctcaGCGCCCACAGGCTGCCCGCCAGCGGgtgt < 2:418159‑M1/29‑1 (MQ=255) aCCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCGGGCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAggg > 1:1045426/1‑149 (MQ=255) aTTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGt > 1:823473/1‑150 (MQ=255) tGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGa < 2:823473/150‑1 (MQ=255) aaGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAg > 2:478903/1‑147 (MQ=255) aaGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAg < 1:478903/147‑1 (MQ=255) ggcggcTGCGCCCACAGGCTGCCCGCCAGCGGGCGTCGCTGCAGACGGGGCGGCTCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAGCTGGGCGAATGGc < 1:805798/150‑1 (MQ=255) gctgctGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAGCTGGGCGAAt < 1:235373/146‑1 (MQ=255) gctgctGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAGCTGGGCGAAt > 2:235373/1‑146 (MQ=255) tgctgcGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGa < 1:222926/104‑1 (MQ=255) tgctgcGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGa > 2:222926/1‑104 (MQ=255) tgcGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAGCTGGGCGAATGGCGTCATc > 1:464935/1‑150 (MQ=255) | ATGCCTGGCGCCTGGCTCAGGGCAAATTGCCACAGGCGTTCGTAGTAATGCCCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAGCTGGGCGAATGGCGTCATC > NC_002947/2283517‑2283813 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |