New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2283665 = | 49 (1.130) | 6 (0.150) | 5/242 | NT | 11.6% | coding (193/978 nt) | PP_2011 | hypothetical protein |
? | NC_002947 | 2283716 = | 45 (1.090) | coding (142/978 nt) | PP_2011 | hypothetical protein |
CCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAGCTGGGCGAATGGCGTCATCCTGCGAGCATAGCCGGTTTGCCGCTGCCCGGTGGTTTCGC > NC_002947/2283569‑2283853 | tgacgccattcgcccagcttcacgacctgccccgacaactgcagcactccaccgtgcgtgacctggcatgggccttgttgtcgccgcccctgctcaGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGa > 2:109909‑M1/97‑150 (MQ=255) tgacgccattcgcccagcttcacgacctgccccgacaactgcagcactccaccgtgcgtgacctggcatgggccttgttgtcgccgcccctgctcaGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGa > 1:771391‑M1/97‑150 (MQ=255) ccAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGa < 2:403273/150‑1 (MQ=255) ggCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCa > 2:322910/1‑150 (MQ=255) cgcCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAgg < 2:781704/150‑1 (MQ=255) cgcCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAgg < 2:348452/150‑1 (MQ=255) gCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGggcgg < 2:912114/150‑1 (MQ=255) ccAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGCGCAGGGGCGGCGaca > 1:152766/1‑150 (MQ=255) ccAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCGGGGGCGGCGaca > 2:805798/1‑150 (MQ=255) cgcgcAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGt < 1:295015/150‑1 (MQ=255) gcgcAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGG‑A‑GGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTcac < 2:441084/150‑1 (MQ=255) cAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTcacg > 1:986271/1‑150 (MQ=255) gtcATCGGCATCCAGCGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCCCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGa < 2:615690/150‑1 (MQ=255) tcATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGggcggc > 2:615175/1‑114 (MQ=255) tcATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGggcggc < 1:615175/114‑1 (MQ=255) tcATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCAt > 2:1038025/1‑129 (MQ=255) tcATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCAt < 1:1038025/129‑1 (MQ=255) tcATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAg > 2:862169/1‑150 (MQ=255) ggCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGtgctg > 1:304071/1‑150 (MQ=255) gCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGtgctgc > 2:348190/1‑150 (MQ=255) cATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCa < 1:719999/150‑1 (MQ=255) cATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCa < 2:498601/150‑1 (MQ=255) aggaaccGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGt > 2:1126655/6‑150 (MQ=255) gCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCgg < 1:322910/150‑1 (MQ=255) aCCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCGGGCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAggg > 1:1045426/1‑149 (MQ=255) aTTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGt > 1:823473/1‑150 (MQ=255) tGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGa < 2:823473/150‑1 (MQ=255) aaGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAg < 1:478903/147‑1 (MQ=255) aaGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAg > 2:478903/1‑147 (MQ=255) ggcggcTGCGCCCACAGGCTGCCCGCCAGCGGGCGTCGCTGCAGACGGGGCGGCTCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAGCTGGGCGAATGGc < 1:805798/150‑1 (MQ=255) gctgctGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAGCTGGGCGAAt > 2:235373/1‑146 (MQ=255) gctgctGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAGCTGGGCGAAt < 1:235373/146‑1 (MQ=255) tgctgcGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGa < 1:222926/104‑1 (MQ=255) tgctgcGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGa > 2:222926/1‑104 (MQ=255) tcagcgccccgccctgcccccagcgacacccgctggcgggcagcctgtgggcgcTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAGCTGGGCGAATGGCGTCa > 2:109909‑M2/55‑150 (MQ=255) tcagcgccccgccctgcccccagcgacacccgctggcgggcagcctgtgggcgcTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAGCTGGGCGAATGGCGTCa > 1:771391‑M2/55‑150 (MQ=255) tgcGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAGCTGGGCGAATGGCGTCATc > 1:464935/1‑150 (MQ=255) CCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACACACGGTg > 2:1096332‑M1/1‑95 (MQ=255) CCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACACACGGTg < 1:1096332‑M1/95‑1 (MQ=255) CCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTca < 1:322176‑M1/85‑1 (MQ=255) CCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTca > 2:322176‑M1/1‑85 (MQ=255) CCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAGCTGGGCGaa > 1:904825‑M1/1‑135 (MQ=255) CCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAGCTGGGCGaa < 2:904825‑M1/135‑1 (MQ=255) CCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAGCTGGGCGAATGGCGTCATCCTGCg < 2:542900‑M1/150‑1 (MQ=255) cccgccctgcccccagcgacacccgctggcgggcagggcggggcgcTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGTACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAGCTGGGCGAATGGCGTCATCCTGCGa > 2:565331‑M2/47‑150 (MQ=255) acaGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAGCTgg > 2:904397/1‑128 (MQ=255) acaGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAGCTgg < 1:904397/128‑1 (MQ=255) gCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAGCTGGGCGAATGGCGTCATCCTGCGAGCATa > 2:385394/1‑150 (MQ=255) ccGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAGCTGGGCGAATGGCGTCATCCTGCGAGCATAGCCgg > 2:487054/1‑150 (MQ=255) ccGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAGCTGGGCGAATGGCGTCATCCTGCGAGCAGAGCCgg < 2:566551/150‑1 (MQ=255) gacacccgctggcgggcagcctgtgggcgcTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAGCTGGGCGAATGGCGTCATCCTGCGAGCATAGCCGGTTTGcc < 2:771391‑M2/120‑1 (MQ=255) acacccgctggcgggcagcctgtgggcgcTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAg < 2:418159‑M2/34‑1 (MQ=255) acacccgctggcgggcagcctgtgggcgcTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAg > 1:418159‑M2/30‑63 (MQ=255) tgtCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAGCTGGGCGAATGGCGTCATCCTGCGAGCATAGCCGGTTTGCCGCTGc > 1:1045246/1‑150 (MQ=255) cTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAGCTGGGCGAATGGCGTCATCCTGCGAGCATAGCCGGTTTGCCGCTGCCCgtg < 1:487054/150‑3 (MQ=255) gggCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAGCTGGGCGAATGGCGTCATCCTGCGAGCATAGCCGGTTTGCCGCTGCCCGGTGGtt < 2:986271/150‑1 (MQ=255) gCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCa < 2:603832/71‑1 (MQ=255) gCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCa > 1:603832/1‑71 (MQ=255) gCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAGCTGGGCGAATTTCGTCATCCTGCGAGCATAGCCGGTTTGCCGCTGCCCGGTGGTTTc < 1:862169/150‑1 (MQ=255) gCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAGCTGGGCGAATGGCGTCATCCTGCGAGCATAGCCGGTTTGCCGCTGCCCGGTGGTTTc > 1:871433/1‑150 (MQ=255) aGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAGCTGGGCGAATGGCGTCATCCTGCGAGCATAGCCGGTTTGCCGCTGCCCGGTGGTTTCGc < 2:304071/150‑1 (MQ=255) | CCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGGGTGTCGCTGGGGGCAGGGCGGGGCGCTGAGCAGGGGCGGCGACAACAAGGCCCATGCCAGGTCACGCACGGTGGAGTGCTGCAGTTGTCGGGGCAGGTCGTGAAGCTGGGCGAATGGCGTCATCCTGCGAGCATAGCCGGTTTGCCGCTGCCCGGTGGTTTCGC > NC_002947/2283569‑2283853 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |