New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3082219	35 (0.810)	5 (0.120)	5/238	NT	12.2%	coding (339/1719 nt)	PP_2691	hypothetical protein
	?	NC_002947	= 3082250	39 (0.960)					coding (308/1719 nt)	PP_2691	hypothetical protein

CTTCTGCCAGCGCCGCCAGAAACCGGTCGAAATTGCGCAAGCTACGGTTGGCCCGCGACAACACCAGCACGCGTGCATCGAAGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCGCAGTGCCGAAGCCTTGACCATC  >  NC_002947/3082071‑3082368                                                                                                                                                     |                                                                                                                                                      cTTCTGCCAGCGCCGCCAGAAACCGGTCGAAATTGCGCAAGCTACGGTTGGCCCGCGACAACACCAGCACGCGTGCATCGAAGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCgg                                                                                                                                                      <  1:769575/150‑1 (MQ=255) cTTCTGCCAGCGCCGCCAGAAACCGGTCGAAATTGCGCAAGCTACGGTTGGCCCGCGACAACACCAGCACGCGTGCATCGAAGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGa                                                                                                                                                      >  1:1069764‑M1/1‑149 (MQ=255)  ttCTGCCAGCGCCGCCAGAAACCGGTCGAAATTGCGCAAGCTACGGTTGGCCCGCGACAACACCAGCACGCGTGCATCGAAGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGc                                                                                                                                                     >  2:1006629/1‑150 (MQ=255)           cgccgcCAGAAACCGGTCGAAATTGCGCAAGCTACGGTTGGCCCGCGACAACACCAGCACGCGTGCATCGAAGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCAc                                                                                                                                            <  1:1116804/150‑1 (MQ=255)            gccgccAGAAACCGGTCGAAATTGCGCAAGCTACGGTTGGCCCGCGACAACACCAGCACGCGTGCATCGAAGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACg                                                                                                                                           <  1:615626/150‑1 (MQ=255)            gccgccAGAAACCGGTCGAAATTGCGCAAGCTACGGTTGGCCCGCGACAACACCAGCACGCGTGCATCGAAGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACg                                                                                                                                           >  2:688963/1‑150 (MQ=255)               gccAGAAACCGGTCGAAATTGCGCAAGCTACGGTTGGCCCGCGACAACACCAGCACGCGTGCATCGAAGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAg                                                                                                                                        <  1:224686/150‑1 (MQ=255)                 cAGAAACCAGTCGAAATTGCGCAAGCTACGGTTGGCCCGCGACAACACCAGCACGCGTGCATCGAAGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCt                                                                                                                                      >  1:746004/1‑150 (MQ=255)                  aGAAACCGGTCGAAATTGCGCAAGCTACGGTTGGCCCGCGACCACACCCGGACGCGTGCATCGAAGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTg                                                                                                                                     <  1:909931/150‑1 (MQ=255)                           tCGAAATTGCGCAAGCTACGGTTGGCCCGCGACAACACCAGCACGCGTGCATCGAAGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGaccagtgggac                                                                                                                                            <  2:428961‑M1/134‑12 (MQ=255)                           tCGAAATTGCGCAAGCTACGGTTGGCCCGCGACAACACCAGCACGCGTGCATCGAAGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGaccagtgggac                                                                                                                                            >  1:428961‑M1/1‑123 (MQ=255)                           tCGAAATTGCGCAAGCTACGGTTGGCCCGCGACAACACCAGCACGCGTGCATCGAAGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCAc                                                                                                                            >  1:124067/1‑150 (MQ=255)                                aTTGCGCAAGCTACGGTTGGCCCGCGACAACACCAGCACGCGTGCATCGAAGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTc                                                                                                                       <  1:951323‑M2/150‑2 (MQ=255)                                  tGCGCAAGCTACGGTTGGCCCGCGACAACACCAGTACGCGTGCATCGAAGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTcgg                                                                                                                     >  1:148681‑M2/1‑147 (MQ=255)                                      cAAGCTACGGTTGGCCCGCGACAACACCAGCACGCGTGCATCGAAGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGaccagtgggacgtcagcttcgtgctggtggccggcgat                                                                                                                 <  2:1069764‑M1/150‑39 (MQ=255)                                                  ggCCCGCGACAACACCAGCACGCGTGCATCGAAGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCt                                                                                                     <  1:829049/150‑1 (MQ=255)                                                                 cAGNACGCGTGCATCGAAGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCcggcgg                                                                                      >  2:696501/1‑150 (MQ=255)                                                                 cAGCACGCGTGCATCGAAGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCcggcgg                                                                                      >  1:1034622/1‑150 (MQ=255)                                                                 cAGCACGCGTGCATCGAAGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGGCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCcggcgg                                                                                      >  2:391486/1‑150 (MQ=255)                                                                  aGCACGCGTGCATCGAAGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCggcggc                                                                                     >  2:1070711/1‑150 (MQ=255)                                                                                  aGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGagaaga                                                                     <  2:804334/150‑1 (MQ=255)                                                                                      gccggcTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTgc                                                                                                   >  1:624492/1‑116 (MQ=255)                                                                                      gccggcTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTgc                                                                                                   <  2:624492/116‑1 (MQ=255)                                                                                       ccggcTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACg                                                                <  2:1120066/150‑1 (MQ=255)                                                                                            ttCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGACGCACGCGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTg                                                           <  1:688963/150‑1 (MQ=255)                                                                                              ccTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGt                                                         >  2:881889/1‑150 (MQ=255)                                                                                               cTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGaccagtgggacgtcagcttcgtgctggtggccgg                                                                                                                     <  1:352781‑M1/89‑35 (MQ=255)                                                                                               cTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGaccagtgggacgtcagcttcgtgctggtggccgg                                                                                                                     >  2:352781‑M1/1‑55 (MQ=255)                                                                                               cTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTa                                                        >  1:391523/1‑150 (MQ=255)                                                                                                    gCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGAcc                                                                                                             <  2:460611/92‑1 (MQ=255)                                                                                                    gCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGAcc                                                                                                             >  1:460611/1‑92 (MQ=255)                                                                                                            ttgcgttgcAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGc                                           >  1:1123711/1‑150 (MQ=255)                                                                                                            ttgcgttgcAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGc                                           <  2:124067/150‑1 (MQ=255)                                                                                                                    cAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGAt                                   <  2:1034622/150‑1 (MQ=255)                                                                                                                      ggTTGGCCAGTTGTGCCGACTAGAAATCGCCGGTTACCAGCACGAAGCTGACGTGCCACTGGTCGGCGATGAGCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGTCGAGGAGATCAAGAAGTGGTAGTGAGCGTTTGGCGTTTTGATGc                                 >  2:512291/1‑150 (MQ=255)                                                                                                                        tCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCgg                               <  2:746004/150‑1 (MQ=255)                                                                                                                            ccAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGa                           <  1:400189/150‑1 (MQ=255)                                                                                                                              aGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGCGGCCGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATc                         <  1:608432/150‑1 (MQ=255)                                                                                                                               gTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCg                        <  1:881889/150‑1 (MQ=255)                                                                                                                                 tgtgCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCGCa                      <  1:493348/150‑1 (MQ=255)                                                                                                                                 tgtgCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCGCa                      <  2:650524/150‑1 (MQ=255)                                                                                                                                 tgtgCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCGCa                      <  1:1006629/150‑1 (MQ=255)                                                                                                                                             aCATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCGCAGTGCCGAAGCCt          >  1:576415/1‑150 (MQ=255)                                                                                                                                              cATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCGCAGTGCCGAAGCCtt         <  2:828614/150‑1 (MQ=255)                                                                                                                                               aTCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTcggcgatgtcgactcggcacaactggccgacctgcaacgcaacgtgccgctgcaggaagccggccgcttcgatgcacgcgtgctggtgttgtcgcgggccaaccgtagcttg        <  2:1069764‑M2/150‑113 (MQ=255)                                                                                                                                                tCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCGCAGTGCCGAAGCCTTGa       <  2:391523/150‑1 (MQ=255)                                                                                                                                                   ccGaccagtgggacgtcagcttcgtgctggtggccggcgatgtcgactcggcacaactggccgacctgcaacgcaacgtgccgctgcaggaagccggccgcttcgatgcacgcgtactggtgttgtcgcgggccaaccgtagcttgcgca    >  1:148681‑M1/1‑3 (MQ=255)                                                                                                                                                   ccGGCCACCAGCACGAAGCTGACGTCCCACTGGTcggcgatgtcgactcggcacaactggccgacctgcaacgcaacgtgccgctgcag                                                                 >  2:352781‑M2/1‑34 (MQ=255)                                                                                                                                                   ccGGCCACCAGCACGAAGCTGACGTCCCACTGGTcggcgatgtcgactcggcacaactggccgacctgcaacgcaacgtgccgctgcag                                                                 <  1:352781‑M2/89‑56 (MQ=255)                                                                                                                                                   ccGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCGCAGTGCCGAAGCCTTGACCa    >  2:837206/1‑150 (MQ=255)                                                                                                                                                     gaccagtgggacgtcagcttcgtgctggtggccggcgatgtcgactcggcacaactggccgacctgcaacgcaacgtgccgctgcaggaagccggccgcttcgatgcacgcgtgctggtgttgtcgcgggccaaccgtagcttgcgcaat  <  1:951323‑M1/150‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                      CTTCTGCCAGCGCCGCCAGAAACCGGTCGAAATTGCGCAAGCTACGGTTGGCCCGCGACAACACCAGCACGCGTGCATCGAAGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCGCAGTGCCGAAGCCTTGACCATC  >  NC_002947/3082071‑3082368

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.