New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3082219	35 (0.810)	5 (0.120)	5/238	NT	12.2%	coding (339/1719 nt)	PP_2691	hypothetical protein
	?	NC_002947	= 3082250	39 (0.960)					coding (308/1719 nt)	PP_2691	hypothetical protein

ATTGCGCAAGCTACGGTTGGCCCGCGACAACACCAGCACGCGTGCATCGAAGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCGCAGTGCCGAAGCCTTGACCATCGAGGTCGAAACAGCTGCGCCGGATTTGCCAG  >  NC_002947/3082102‑3082399                                                                                                                                                     |                                                                                                                                                      aTTGCGCAAGCTACGGTTGGCCCGCGACAACACCAGCACGCGTGCATCGAAGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTc                                                                                                                                                      <  1:951323‑M2/150‑2 (MQ=255)   tGCGCAAGCTACGGTTGGCCCGCGACAACACCAGTACGCGTGCATCGAAGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTcgg                                                                                                                                                    >  1:148681‑M2/1‑147 (MQ=255)                   ggCCCGCGACAACACCAGCACGCGTGCATCGAAGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCt                                                                                                                                    <  1:829049/150‑1 (MQ=255)                                  cAGNACGCGTGCATCGAAGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCcggcgg                                                                                                                     >  2:696501/1‑150 (MQ=255)                                  cAGCACGCGTGCATCGAAGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCcggcgg                                                                                                                     >  1:1034622/1‑150 (MQ=255)                                  cAGCACGCGTGCATCGAAGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGGCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCcggcgg                                                                                                                     >  2:391486/1‑150 (MQ=255)                                   aGCACGCGTGCATCGAAGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCggcggc                                                                                                                    >  2:1070711/1‑150 (MQ=255)                                                   aGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGagaaga                                                                                                    <  2:804334/150‑1 (MQ=255)                                                       gccggcTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTgc                                                                                                                                  <  2:624492/116‑1 (MQ=255)                                                       gccggcTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTgc                                                                                                                                  >  1:624492/1‑116 (MQ=255)                                                        ccggcTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACg                                                                                               <  2:1120066/150‑1 (MQ=255)                                                             ttCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGACGCACGCGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTg                                                                                          <  1:688963/150‑1 (MQ=255)                                                               ccTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGt                                                                                        >  2:881889/1‑150 (MQ=255)                                                                cTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTa                                                                                       >  1:391523/1‑150 (MQ=255)                                                                     gCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGAcc                                                                                                                                            >  1:460611/1‑92 (MQ=255)                                                                     gCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGAcc                                                                                                                                            <  2:460611/92‑1 (MQ=255)                                                                             ttgcgttgcAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGc                                                                          <  2:124067/150‑1 (MQ=255)                                                                             ttgcgttgcAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGc                                                                          >  1:1123711/1‑150 (MQ=255)                                                                                     cAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGAt                                                                  <  2:1034622/150‑1 (MQ=255)                                                                                       ggTTGGCCAGTTGTGCCGACTAGAAATCGCCGGTTACCAGCACGAAGCTGACGTGCCACTGGTCGGCGATGAGCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGTCGAGGAGATCAAGAAGTGGTAGTGAGCGTTTGGCGTTTTGATGc                                                                >  2:512291/1‑150 (MQ=255)                                                                                         tCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCgg                                                              <  2:746004/150‑1 (MQ=255)                                                                                             ccAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGa                                                          <  1:400189/150‑1 (MQ=255)                                                                                               aGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGCGGCCGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATc                                                        <  1:608432/150‑1 (MQ=255)                                                                                                gTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCg                                                       <  1:881889/150‑1 (MQ=255)                                                                                                  tgtgCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCGCa                                                     <  2:650524/150‑1 (MQ=255)                                                                                                  tgtgCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCGCa                                                     <  1:1006629/150‑1 (MQ=255)                                                                                                  tgtgCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCGCa                                                     <  1:493348/150‑1 (MQ=255)                                                                                                              aCATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCGCAGTGCCGAAGCCt                                         >  1:576415/1‑150 (MQ=255)                                                                                                               cATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCGCAGTGCCGAAGCCtt                                        <  2:828614/150‑1 (MQ=255)                                                                                                                aTCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTcggcgatgtcgactcggcacaactggccgacctgcaacgcaacgtgccgctgcaggaagccggccgcttcgatgcacgcgtgctggtgttgtcgcgggccaaccgtagcttg                                       <  2:1069764‑M2/150‑113 (MQ=255)                                                                                                                 tCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCGCAGTGCCGAAGCCTTGa                                      <  2:391523/150‑1 (MQ=255)                                                                                                                    ccGGCCACCAGCACGAAGCTGACGTCCCACTGGTcggcgatgtcgactcggcacaactggccgacctgcaacgcaacgtgccgctgcag                                                                                                >  2:352781‑M2/1‑34 (MQ=255)                                                                                                                    ccGGCCACCAGCACGAAGCTGACGTCCCACTGGTcggcgatgtcgactcggcacaactggccgacctgcaacgcaacgtgccgctgcag                                                                                                <  1:352781‑M2/89‑56 (MQ=255)                                                                                                                    ccGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCGCAGTGCCGAAGCCTTGACCa                                   >  2:837206/1‑150 (MQ=255)                                                                                                                          accaGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCGCAGTGCCGAAGCCTTGACCATCGAgg                             >  2:43811/1‑150 (MQ=255)                                                                                                                              gCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGGGATTGGATGCGGTAGATCGCAGTGCCGAAGCCTTGACCATCGAGGTCGa                         >  1:618555/1‑150 (MQ=255)                                                                                                                                aCGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCGCAGTGCCGaa                                             >  2:237282/1‑128 (MQ=255)                                                                                                                                aCGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCGCAGTGCCGaa                                             <  1:237282/128‑1 (MQ=255)                                                                                                                                aCGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCGCAGTGCCGAAGCCTTGACCATCGAGGTCGaaa                       <  1:175037/150‑1 (MQ=255)                                                                                                                                  gAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCGCAGTGCCGAAGCCTTGACCCTCGAGGTCGAAACa                     >  1:775694/1‑150 (MQ=255)                                                                                                                                  gAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCGCAGTGCCGAAGCCTTGACCATCGa                               <  1:635578/140‑1 (MQ=255)                                                                                                                                  gAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCGCAGTGCCGAAGCCTTGACCATCGa                               >  2:635578/1‑140 (MQ=255)                                                                                                                                       tGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCGCAGTGCCGAAGCCTTGACCATCGAGGTCGAAACAGCTgc                >  1:894011/1‑150 (MQ=255)                                                                                                                                       tGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCGCAGTGCCGAAGCCTTGACCATCGAGGTCGAAACAGCTgc                <  1:696501/150‑1 (MQ=255)                                                                                                                                        gACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCGCAGTGCCGAAGCCTTGACCATCGAGGTCGAAACAGCTgcg               >  1:1089715/1‑150 (MQ=255)                                                                                                                                           gTCCCACTGGTcggcgatgtcgactcggcacaactggccgacctgcaacgcaacgtgccgctgcaggaagccggccgcttcgatgcacgcgtgctggtgttgtcgcgggccaaccgtagcttgcgcaatttcga                            <  2:428961‑M2/134‑124 (MQ=255)                                                                                                                                           gTCCCACTGGTcggcgatgtcgactcggcacaactggccgacctgcaacgcaacgtgccgctgcaggaagccggccgcttcgatgcacgcgtgctggtgttgtcgcgggccaaccgtagcttgcgcaatttcga                            >  1:428961‑M2/1‑11 (MQ=255)                                                                                                                                              ccACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCGCAGTGCCGAAGCCTTGACCATCGAGGTCGAAACAGCTGCGCCGGAt         <  1:1070711/150‑1 (MQ=255)                                                                                                                                                    gTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCGCAGTGCCGAAGCCTTGACCATCGAGGTCGAAACAGCTGCGCCGGATTTGCCa   >  2:295621/1‑150 (MQ=255)                                                                                                                                                    gTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCGCAGTGCCGAAGCCTTGACCATCGAGGTCGAAACAGCTGCGCCGGATTTGCCa   <  2:894011/150‑1 (MQ=255)                                                                                                                                                     tcggcgatgtcgactcggcacaactggccgacctgcaacgcaacgtgccgctgcaggaagccggccgcttcgatgcacgcgtgctggtgttgtcgcgggccaaccgtagcttgcgcaatttcgaccggtttctggcggcgctggcagaag  >  1:1069764‑M2/1‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                      ATTGCGCAAGCTACGGTTGGCCCGCGACAACACCAGCACGCGTGCATCGAAGCGGCCGGCTTCCTGCAGCGGCACGTTGCGTTGCAGGTCGGCCAGTTGTGCCGAGTCGACATCGCCGGCCACCAGCACGAAGCTGACGTCCCACTGGTCGGCGATGACCCGATCGCTGCGCTTTTCCGGCGGCAGGTAGGCCGAGAAGATCACGCAGTGGTAATGGCCGTTTGGCGTTTCGATGCGGTAGATCGCAGTGCCGAAGCCTTGACCATCGAGGTCGAAACAGCTGCGCCGGATTTGCCAG  >  NC_002947/3082102‑3082399

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.