| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3390905 | 37 (0.850) | 4 (0.100) | 4/238 | NT | 10.6% | coding (72/1257 nt) | PP_2994 | FMN‑binding oxidoreductase |
| ? | NC_002947 | = 3390913 | 33 (0.810) | coding (80/1257 nt) | PP_2994 | FMN‑binding oxidoreductase | |||||
CTTGAAAAAGGTATTGACCTTAAAGTCGACTTCAAACTTAAGGTGGCCGCATTTCCAGTTGAGGACTGCTCCATGAATGTGTTCGACACCCTGATGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAACATGGCGGATGCCCACCAGGCGCCTTCCGAAGCACTCATGCGTCTCTATCAAGCGTGGGCCG‑ACGGTGGTGCCGGCCTGATTATCACTGGCAATGTGATGGTCGACGGCCGCGCCATGACCGGGCCGGGTGGCGTGGT > NC_002947/3390762‑3391051 | cTTGAAAAAGGTATTGACCTTAAAGTCGACTTCAAACTTAAGGTGGCCGCATTTCCAGTTGAGGACTGCTCCATGAATGTGTTCGACACCCTGATGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAagag > 2:888435/1‑150 (MQ=255)cTTGAAAAAGGTATTGACCTTAAAGTCGACTTCAAACTTAAGGTGGCCGCATTTCCAGTTGAGGACTGCTCCATGAATGTGTTCGACACCCTGATGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAagag > 2:668259/1‑150 (MQ=255) tGAAAAAGGTATTGACCTTAAAGTCGACTTCAAACTTAAGGTGGCCGCATTTCCAGTTGAGGACTGCTCCATGAATGTGTTCGACACCCTGATGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGaa < 1:77912/150‑1 (MQ=255) aaaaGGTATTGACCTTAAAGTCGACTTCAAACTTAAGGTGGCCGCATTTCCAGTTGAGGACTGCTCCATGAATGTGTTCGACACCCTGATGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAAcat < 2:717686‑M2/150‑4 (MQ=255) aaaGGTATTGACCTTAAAGTCGACTTCAAACTTAAGGTGGCCGCATTTCCAGTTGAGGACTGCTCCATGAATGTGTTCGACACCCTGATGCTTCCCCACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGttctcttccatg > 1:514119‑M1/1‑138 (MQ=255) aaaGGTATTGACCTTAAAGTCGACTTCAAACTTAAGGTGGCCGCATTTCCAGTTGAGGACTGCTCCATGAATGTGTTCGACACCCTGATGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAAcatg > 2:663823‑M2/1‑146 (MQ=255) aaaGGTATTGACCTTAAAGTCGACTTCAAACTTAAGGTGGCCGCATTTCCAGTTGAGGACTGCTCCATGAATGTGTTCGACACCCTGATGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAAcatg < 2:670520‑M2/150‑5 (MQ=255) ggTATTGACCTTAAAGTCGACTTCAAACTTAAGGTGGCCGCATTTCCAGTTGAGGACTGCTCCATGAATGTGTTCGACACCCTGATGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAAcatggcg > 2:7124‑M2/1‑143 (MQ=255) tATTGACCTTAAAGTCGACTTCAAACTTAAGGTGGCCGCATTTCCAGTTGAGGACTGCTCCATGAATGTGTTCGACACCCTGATGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAACATGGCGGa < 1:984477/150‑1 (MQ=255) aaaGTCGACTTCAAACTTAAGGTGGCCGCATTTCCAGTTGAGGACTGCTCCATGAATGTGTTCGACACCCTGATGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAACATGGCGGATGCCCACCAg < 2:39981/150‑1 (MQ=255) cGACTTCAAACTTAAGGTGGCCGCATTTCCAGTGGAGGCCGGCTCAATGAATGTGTTCGACACCCTGAGGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGttctcttccatggcggctttggcgagtcggtt < 2:514119‑M1/150‑33 (MQ=255) gACTTCAAACTTAAGGTGGCCGCATTTCCAGTTGAGGACTGCTCCATGAATGTGTTCGACACCCTGATGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAAc < 2:696946‑M2/126‑2 (MQ=255) gACTTCAAACTTAAGGTGGCCGCATTTCCAGTTGAGGACTGCTCCATGAATGTGTTCGACACCCTGATGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAAc > 1:696946‑M2/1‑125 (MQ=255) ttCAAACTTAAGGTGGCCGCATTTCCAGTTGAGGACTGCTCCATGAATGTGTTCGACACCCTGATGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAACATGGCGGATGCCCACCAGGCGCCTTcc > 1:339131/1‑150 (MQ=255) ttCAAACTTAAGGTGGCCGCATTTCCAGTTGAGGACTGCTCCATGAATGTGTTCGACACCCTGATGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAACATGGCGGATGCCCACCAGGCGCCTTcc > 1:1115129/1‑150 (MQ=255) aaaCTTAAGGTGGCCGCATTTCCAGTTGAGGGCTGCTCCATGAATGTGTTCGACACCCTGATGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAACATGGCGGATGCCCACCAGGCGCCTTCCGaa > 2:540936/1‑150 (MQ=255) aaaCTTAAGGTGGCCGCATTTCCAGTTGAGGACTGCTCCATGAATGTGTTCGACACCCTGATGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAACATGGCGGATGCCCACCAGGCGCCTTCCGaa < 2:746800/150‑1 (MQ=255) aaCTTAAGGTGGCCGCATTTCCAGTTGAGGACTGCTCCATGAATGTGTTCGACACCCTGATGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAACATGGCGGATGCCCACCAGGCGCCTTCCGAAg < 2:1115129/150‑1 (MQ=255) ttAAGGTGGCCGCATTTCCAGTTGAGGACTGCTCCATGAATGTGTTCGACACCCTGATGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAACATGGCGGATGCCCACCAGGCCCCTTCCGAAGCAc > 2:903117/1‑150 (MQ=255) tGGCCGCATTTCCAGTTGAGGACTGCTCCATGAATGTGTTCGACACCCTGATGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAACATGGCGGATGCCCACCAGGCGCCTTCCGAAGCACTCATGc > 1:803056/1‑150 (MQ=255) tGGCCGCATTTCCAGTTGAGGACTGCTCCATGAATGTGTTCGACACCCTGATGCTTCCCAACGGTTCAACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAAcatg < 2:457522‑M2/113‑5 (MQ=255) tGGCCGCATTTCCAGTTGAGGACTGCTCCATGAATGTGTTCGACACCCTGATGCTTCCCAACGGTTCAACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAAcatg > 1:457522‑M2/1‑109 (MQ=255) cgaaaatCCAGTTGAGGACTGCTCCATGAATGTGTTCGACACCCTGATGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGTCGCCATGGAAGAGAACATGGCGGATTCCCACCAGGCGCCTTCCGAAGCACTCATGCGtct > 2:381032/7‑150 (MQ=255) gCATTTCCAGTTGAGGACTGCTCCATGAATGTGTTCGACACCCTGATGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAAcatggc > 2:1070804‑M2/1‑104 (MQ=255) gCATTTCCAGTTGAGGACTGCTCCATGAATGTGTTCGACACCCTGATGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAAcatggc < 1:1070804‑M2/110‑7 (MQ=255) aTTTCCAGTTGAGGACTGCTCCATGAATGTGTTCGACACCCTGATGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAACATGGCGGATGCCCACCAGGCGCCTTCCGAAGCACTCATGCGTCTCTa < 2:157956/150‑1 (MQ=255) tCCATGAATGTGTTCGACACCCTGATGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAagag > 1:595274/1‑81 (MQ=255) tCCATGAATGTGTTCGACACCCTGATGCTTCCCAACGGTTCGACCCTCAAGAACCGAATCGCCAAAGCCGCCATGGAagag < 2:595274/81‑1 (MQ=255) aTGAATGTGTTCGACACCCTGATGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAACATGGCGGATGCCCACCAGGCGCCTTCCGAAGCACTCATGCGTCTCTATCAAGCGTGGGCCG‑ACggtggt > 2:479531/1‑150 (MQ=255) gACACCCTGATGCTTCCTAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAACATGGCGGATGcc < 2:268835/81‑1 (MQ=255) gACACCCTGATGCTTCCTAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAACATGGCGGATGcc > 1:268835/1‑81 (MQ=255) acCCTGATGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAACATGGCGGATGCCCACCAGGCGCCTTCCGAAGCACTCATGCGTCTCTATCAAGCGTGGGCCG‑ACGGTGGTGCCGGCCTGATTATc > 1:281983/1‑150 (MQ=255) cccTGATGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAACATGGCGGATGCCCACCAGGCGCCTTCCGAAGCACTCATGCGTCTCTATCAAGCGTGGGCCG‑ACGGTGGTGCCGGCCTGATTATCa < 1:447773/150‑1 (MQ=255) cTGATGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAag > 2:396964/1‑58 (MQ=255) cTGATGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAag < 1:396964/58‑1 (MQ=255) tGATGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAACATGGCGGATGCCCACCAGGCGCCTTCCGAAGCACTCATGCGTCTCTATCAAGCGTGGGCCG‑ACGGTGGTGCCGGCCTGATTATCACTg > 2:176108/1‑150 (MQ=255) gCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAACATGGCGGATGCCCACCAGGCGCCTTCCGAAGCACTCATGCGTCTCTATCAAGCGTGGGCCG‑ACGGTGGTGCCGGCCTGATTATCACTGGCaa > 2:784531/1‑150 (MQ=255) ttCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGttctcttccatggcggctttggcgatt > 1:617677‑M1/1‑47 (MQ=255) ttCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGttctcttccatggcggctttggcgatt < 2:617677‑M1/74‑28 (MQ=255) ttCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAACATGGCGGATGCCCACCAGGCGCCTTCCGAAGCACTCATGCGTCTCTATCAAGCGTGGGCCG‑ACGGTGGTGCCGGCCTGATTATCACTGGCAAtg > 1:165524/1‑150 (MQ=255) ttCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAACATGGCGGATGCCCACCAGGCGCCTTCCGAAGCACTCATGCGTCTCTATCAAGCGTCGGCCG‑ACGGTGGTGCCGGCCTGATTATCACTGGCaacg > 2:191508/1‑148 (MQ=255) ccAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAACATGGCGGATGCCCACCAGGCGCCTTCCGAAGCACTCATGCGTCTCTATCAAGCGTGGGCCG‑ACGGTGGTGCCGGCCTGATTATCACTGGCAATGTGa > 1:932669/1‑150 (MQ=255) aaCGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAACATGGCGGATGCCCACCAGGCGCCTTCCGAAGCACTCATGCGTCTCTATCAAGCGTGGGCCG‑ACGGTGGTGCCGGCCTGATTATCACTGGCAATGTGATg < 1:668259/150‑1 (MQ=255) ggTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAACATGGCGGATGCCCACCAGGCGCCTTCCGAAGCACTCATGCGTCTCTATCAAGCGTGGGCCG‑ACGGTGGTGCCGGCCTGATTATCACTGGCAATGTGATGGTc < 1:784531/150‑1 (MQ=255) aCCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAACATGGCGGATGCCCACCAGGCGCCTTCCGAAGCACTCATGCGTCTCTATCAAGCGTGGGCCG‑ACGGTGGTGCCGGCCTGATTATCACTGGCAATGTGATGGTCGACGGc > 1:513631/1‑150 (MQ=255) gTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAACATGGCGGATGCCCACCAGGCGCCTTCCGAAGCACTCATGCGTCTCTATCAAGCGTGGGCCG‑ACGGTGGTGCCGGCCTGATTATCACTGGCAATGTGATGGTCGACGGCcgc < 1:540936/150‑1 (MQ=255) tCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAACATGGCGGATGCCCACCAGGCGCCTTCCGAAGCACTCATGCGTCTCTATCAAGCGTGGGCCG‑ACGGTGGTGc > 2:48517/1‑109 (MQ=255) tCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAACATGGCGGATGCCCACCAGGCGCCTTCCGAAGCACTCATGCGTCTCTATCAAGCGTGGGCCG‑ACGGTGGTGc < 1:48517/109‑1 (MQ=255) aaCCGACTCGCCAAAGCCGCCATGGAAGAGAAcatggcggctttggcgattcggttcttgacggtcgaaccgttgggaagcctcagggtgtcgaacacattcattgagccggcctccactggaaatgcggccaccttaagtttgaagtcg < 2:514119‑M2/150‑119 (MQ=255) aaTCGCCAAAGCCGCCATGGAAGAGAAcatggcggctttggcgattcggttcttgacggtcgaaccgttgggaa > 1:617677‑M2/1‑27 (MQ=255) aaTCGCCAAAGCCGCCATGGAAGAGAAcatggcggctttggcgattcggttcttgacggtcgaaccgttgggaa < 2:617677‑M2/74‑48 (MQ=255) ccAAAGCCGCCATGGAAGAGAACATGGCGGATGCCCACCAGGCGCCTTCCGAAGCACTCATGCGTCTCTATCAAGCGTGGGCCG‑ACGGTGGTGCCGGCCTGATTATCACTGGCAATGTGATGGTCGACGGCCGCGCCATGAccgggccgg > 1:909376/1‑150 (MQ=255) ccAAAGCCGCCATGGAAGAGAACATGGCGGATGCCCACCAGGCGCCTTCCGAAGCACTCATGCGTCTCTATCAA‑CAATCTCTGCGCAGTGGTGCCGGCCTGATTATCACTGGCAATGTGATGGTAGGCGGTAGAACCAGGAccgtgccgg > 1:800877/1‑150 (MQ=255) aaGCCGCCATGGAAGAGAACATGGCGGATGCCCACCAGGCGCCTTCCGAAGCACTCATGCGTCTCTATCAAGCGTGGGCCG‑ACGGTGGTGCCGGCCTGATTATCACTGGCAATGTGATGGTCGACGGCCGCGCCATGACCGGGCCGGGTg < 1:843257/150‑1 (MQ=255) cgccATGttctcttccatggcggctttggcgattcggttcttgacggtcgaaccgttgggaagcatcagggtgtcgaacacattcatggagcagtcctcaactggaaatgcggccaccttaagtttgaagtcgactttaaggtcaatacc > 2:7124‑M1/1‑7 (MQ=255) cgccATGGAAGAGAACATGGCGGATGCCCACCAGGCGCCTTCCGAAGCACTCATGCGTCTCTATCAAGCGTGGGCCG‑ACGGTGGTGCCGGCCTGATTATCACTGGCAATGTGATGGTCGACGGCCGCGCCATGACCGGGCCGGGTGGCGt < 2:932669/150‑1 (MQ=255) gccATGttctcttccatggcggctttggcgattcggttcttgacggtcgaaccgttgggaagcatcagggtgtcgaacacattcatggagcagtcctcaactggaaatgc > 2:1070804‑M1/1‑6 (MQ=255) gccATGttctcttccatggcggctttggcgattcggttcttgacggtcgaaccgttgggaagcatcagggtgtcgaacacattcatggagcagtcctcaactggaaatgc < 1:1070804‑M1/110‑105 (MQ=255) gccATGGAAGAGAACATGGCGGATGCCCACCAGGCGCCTTCCGAAGCACTCATGCGTCTCTATCAAGCGTGGGCCG‑ACGGTGGTGCCGGCCTGATTATCACTGGCAATGTGATGGTCGACGGCCGCGCCATGACCGGGCCGGGTGGCGTg < 1:581315/150‑1 (MQ=255) ccATGGAAGAGAACATGGCGGATGCCCACCAGGCGCCTTCCGAAGCACTCATGCGTCTCTATCAAGCGTGGGCCG‑ACGGTGGTGCCGGCCTGATTATCACTGGCAATGTGATGGTCGACGGCCGCGCCATGACCGGGCCGGGTGGCGTgg < 1:670520/150‑1 (MQ=255) cATGttctcttccatggcggctttggcgattcggttcttgacggttgaaccgttgggaagcatcagggtgtcgaacacattcatggagcagtcctcaactggaaatgcggcca > 1:457522‑M1/1‑4 (MQ=255) cATGttctcttccatggcggctttggcgattcggttcttgacggttgaaccgttgggaagcatcagggtgtcgaacacattcatggagcagtcctcaactggaaatgcggcca < 2:457522‑M1/113‑110 (MQ=255) cATGttctcttccatggcggctttggcgattcggttcttgacggtcgaaccgttgggaagcatcagggtgtcgaacacattcatggagcagtcctcaactggaaatgcggccaccttaagtttgaagtcgactttaaggtcaataccttt > 2:663823‑M1/1‑4 (MQ=255) cATGttctcttccatggcggctttggcgattcggttcttgacggtcgaaccgttgggaagcatcagggtgtcgaacacattcatggagcagtcctcaactggaaatgcggccaccttaagtttgaagtcgactttaaggtcaataccttt < 2:670520‑M1/150‑147 (MQ=255) cATGGAAGAGAAcatggcggctttggcgattcggttcttgacggtcgaaccgtggggaagcatcagggtgtcgaacacattcatggagcagtcctcaactggaaatgcggccaccttaagtttgaagtcgactttaaggtcaataccttt > 1:514119‑M2/1‑12 (MQ=255) aTGttctcttccatggcggctttggcgattcggttcttgacggtcgaaccgttgggaagcatcagggtgtcgaacacattcatggagcagtcctcaactggaaatgcggccaccttaagtttgaagtcgactttaaggtcaatacctttt < 2:717686‑M1/150‑148 (MQ=255) gttctcttccatggcggctttggcgattcggttcttgacggtcgaaccgttgggaagcatcagggtgtcgaacacattcatggagcagtcctcaactggaaatgcggccaccttaagtttgaagtc < 2:696946‑M1/126‑126 (MQ=255) gttctcttccatggcggctttggcgattcggttcttgacggtcgaaccgttgggaagcatcagggtgtcgaacacattcatggagcagtcctcaactggaaatgcggccaccttaagtttgaagtc > 1:696946‑M1/1‑1 (MQ=255) | CTTGAAAAAGGTATTGACCTTAAAGTCGACTTCAAACTTAAGGTGGCCGCATTTCCAGTTGAGGACTGCTCCATGAATGTGTTCGACACCCTGATGCTTCCCAACGGTTCGACCGTCAAGAACCGAATCGCCAAAGCCGCCATGGAAGAGAACATGGCGGATGCCCACCAGGCGCCTTCCGAAGCACTCATGCGTCTCTATCAAGCGTGGGCCG‑ACGGTGGTGCCGGCCTGATTATCACTGGCAATGTGATGGTCGACGGCCGCGCCATGACCGGGCCGGGTGGCGTGGT > NC_002947/3390762‑3391051 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |