New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3750171 = | 52 (1.200) | 3 (0.070) | 3/240 | NT | 6.1% | coding (212/456 nt) | PP_3314 | HSP20 family heat shock protein |
? | NC_002947 | 3750238 = | 43 (1.050) | coding (145/456 nt) | PP_3314 | HSP20 family heat shock protein |
ACCTGATCATTGAGGCTCACGGTACGCTTGAAGGGACCTGCATAGCGCTCGTTGGCGTACACGGAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCA > NC_002947/3750027‑3750315 | aCCTGATCATTGAGGCTCACGGTACGCTTGAAGGGACCTGCATAGCGCTCGTTGGCGTACACGGAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCg > 2:247037/1‑150 (MQ=255) ccTGATCATTGAGGCTCACGGTACGCTTGAAGGGACCTGCATAGCGCTCGTTGGCGTACACGGAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGc > 1:113358/1‑150 (MQ=255) cTGGTCATTGAGGCTCACGGTACGCTTGAAGGGACCTGCATAGCGCTCGTTGGCGTACACGGAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCt > 1:336770/1‑150 (MQ=255) cTGATCATTGAGGCTCACGGTACGCTTGAAGGGACCTGCATAGCGCTCGTTGGCGTACACGGAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCt > 2:1049978/1‑150 (MQ=255) tGATCATTGAGGCTCACGGTACGCTTGAAGGGACCTGCATAGCGCTCGTTGGCGTACACGGAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTc > 1:46988/1‑150 (MQ=255) aTCATTGAGGCTCACGGTACGCTTGAAGGGATCTGCATAGCTCTCGTTGGCGTAGAAGGAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCgg > 1:865759/1‑150 (MQ=255) aTTGAGGCTCACGGTACGCTTGAAGGGACCTGCATAGCGCTCGTTGGCGTACACGGAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTc > 2:580115/1‑150 (MQ=255) gCTCACGGTACGCTTGAAGGGACCTGCATAGCGCTCGTTGGCGTACACGGAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGcc > 2:600748/1‑150 (MQ=255) cTCACGGTACGCTTGAAGGGACCTGCATAGCGCTCGTTGGCGTACACGGAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCg < 2:865759/150‑1 (MQ=255) tCACGGTACGCTTGAAGGGACCTGCATAGCGCTCGTTGGCGTACACGGAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCgg < 2:336770/150‑1 (MQ=255) tCACGGTACGCTTGAAGGGACCTGCATAGCGCTCGTTGGCGTACACGGAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCgg > 2:136336/1‑150 (MQ=255) cACGGTACGCTTGAAGGGACCTGCATAGCGCTCGTTGGCGTACACGGAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCggg > 1:393322/1‑150 (MQ=255) aCGCTTGAAGGGACCTGCATAGCGCTCGTTGGCGTACACGGAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGaa < 1:600748/150‑1 (MQ=255) gAAGGGACCTGCATAGCGCTCGTTGGCGTACACGGAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTa < 2:393322/150‑1 (MQ=255) tccgattgccgagttcgagaagctccagcgcgaactgcaacatgtgctgggaacggggctcgggcgcccaggcagcattcgtgccttggccagtggtgcttttcctgccatcaAt > 2:627459‑M1/114‑115 (MQ=255) tccgattgccgagttcgagaagctccagcgcgaactgcaacatgtgctgggaacggggctcgggcgcccaggcagcattcgtgccttggccagtggtgcttttcctgccatcaAt < 1:627459‑M1/2‑1 (MQ=255) aCCTGCATAGCGCTCGTTGGCGTACACGGAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAACACTCGGTGAATGTGCAGTATAG‑TGTCACTCGCGTCACCGCCAGTAACAAAGGCGAAAAccgc > 2:336330/1‑148 (MQ=255) cTGCATAGCGCTCGTTGGCGTACACGGAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCa > 2:14058/1‑150 (MQ=255) cTGCATAGCGCTCGTTGGCGTACACGGAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCa > 1:534073/1‑150 (MQ=255) cTGCATAGCGCTCGTTGGCGTACACGGAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGGCAACGCCGGGAACGAAGGCGTAGACCTCCa > 2:994772/1‑150 (MQ=255) gcTCGTTGGCGTACACGGAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATg > 1:547411/1‑150 (MQ=255) cGTTGGCGTACACGGAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCg < 1:1116301/150‑1 (MQ=255) gTTGGCGTACACGGAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGt > 2:541192/1‑150 (MQ=255) gCGTACACGGAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGc < 1:720668/122‑1 (MQ=255) gCGTACACGGAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGc > 2:720668/1‑122 (MQ=255) acGGAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACa > 1:118206/1‑150 (MQ=255) ggAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACAtt > 2:681083/1‑150 (MQ=255) gaactgcaacatgtgctgggaacggggctcgggcgcccaggcagcattcgtgccttggccagtggtgcttttcctgccatcaATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACAtt > 1:668460‑M1/83‑150 (MQ=255) cAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATg > 1:246246/1‑150 (MQ=255) aaTTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATgg > 2:911865/1‑150 (MQ=255) aaTGGCCCTCCTGCTGGCAGATCGCGTGCCGGCGCTCGCCGGAAAGCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATgg < 2:177718/150‑1 (MQ=255) caacatgtgctgggaacggggctcgggcgcccaggcagcattcgtgccttggccagtggtgcttttcctgccatcaATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGAc < 1:941736‑M1/65‑1 (MQ=255) caacatgtgctgggaacggggctcgggcgcccaggcagcattcgtgccttggccagtggtgcttttcctgccatcaATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGAc > 2:941736‑M1/77‑141 (MQ=255) tGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAg < 1:158990/150‑1 (MQ=255) ctcctGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGaaa > 2:712484/1‑150 (MQ=255) tcctGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTa < 1:279865/104‑1 (MQ=255) tcctGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTa > 2:279865/1‑104 (MQ=255) tcctGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGaaaa > 2:4836/1‑150 (MQ=255) gCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGcac < 1:541192/150‑1 (MQ=255) tgcGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTgg < 2:118206/150‑1 (MQ=255) cgcgGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCaa < 1:911865/150‑1 (MQ=255) cgcgGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCaa < 1:712484/150‑1 (MQ=255) gCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCAc < 2:1008303/150‑1 (MQ=255) ggCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGaa < 1:1049978/150‑1 (MQ=255) gcgcTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAAt < 1:14058/150‑1 (MQ=255) cgcTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAAtg < 1:681083/150‑1 (MQ=255) cTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAAtgct < 1:580115/150‑1 (MQ=255) aTCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGgcgc > 1:995189/1‑150 (MQ=255) aTCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGAACTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGgcgc < 1:247037/150‑1 (MQ=255) cGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGACCAAGGCACGAATGCTGCCTGGGCGccc < 2:46988/150‑1 (MQ=255) ccTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGCCCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCCCTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGtt < 2:435737/150‑1 (MQ=255) ccTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGtt > 1:799783/1‑150 (MQ=255) ccTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGtt > 1:557255/1‑150 (MQ=255) ggTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCa < 1:136336/150‑1 (MQ=255) tGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGAAAAAGCACCACTGGCCAAGGCACGAATTCTGCCTGCGCGCCCGAGCCCCGTTCCCAGCACATGt < 2:547411/150‑1 (MQ=255) gCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGGGCCCCGTTCCCAGCACATGtt < 1:994772/150‑1 (MQ=255) aG‑ATCGATGTGGCTCGGGTCAACGCCGGGAACGAAGGGCTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATCGCCGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGTCGCCCGAGCCCCCTTCCCAGCACATGTTGc > 2:525603/1‑150 (MQ=255) g‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCa < 2:1109047/150‑1 (MQ=255) ATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCGTGCTCGATGGCGTGCTcgc < 2:102038‑M1/62‑1 (MQ=255) ATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCGTGCTCGATGGCGTGCTcgc > 1:102038‑M1/1‑62 (MQ=255) | ACCTGATCATTGAGGCTCACGGTACGCTTGAAGGGACCTGCATAGCGCTCGTTGGCGTACACGGAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAG‑ATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCA > NC_002947/3750027‑3750315 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |