New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3750171 = | 52 (1.200) | 3 (0.070) | 3/240 | NT | 6.1% | coding (212/456 nt) | PP_3314 | HSP20 family heat shock protein |
? | NC_002947 | 3750238 = | 43 (1.050) | coding (145/456 nt) | PP_3314 | HSP20 family heat shock protein |
GGAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGAGCTTCTCGAACTCGGCAATCGGATCGCTCGACAGATTAAGAAGGGA > NC_002947/3750089‑3750373 | ggAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACAtt > 2:681083/1‑150 (MQ=255) gaactgcaacatgtgctgggaacggggctcgggcgcccaggcagcattcgtgccttggccagtggtgcttttcctgccatcaATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACAtt > 1:668460‑M1/83‑150 (MQ=255) cAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATg > 1:246246/1‑150 (MQ=255) aaTTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATgg > 2:911865/1‑150 (MQ=255) aaTGGCCCTCCTGCTGGCAGATCGCGTGCCGGCGCTCGCCGGAAAGCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATgg < 2:177718/150‑1 (MQ=255) tGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAg < 1:158990/150‑1 (MQ=255) ctcctGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGaaa > 2:712484/1‑150 (MQ=255) tcctGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGaaaa > 2:4836/1‑150 (MQ=255) gCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGcac < 1:541192/150‑1 (MQ=255) tgcGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTgg < 2:118206/150‑1 (MQ=255) cgcgGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCaa < 1:712484/150‑1 (MQ=255) cgcgGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCaa < 1:911865/150‑1 (MQ=255) gCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCAc < 2:1008303/150‑1 (MQ=255) ggCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGaa < 1:1049978/150‑1 (MQ=255) gcgcTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAAt < 1:14058/150‑1 (MQ=255) cgcTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAAtg < 1:681083/150‑1 (MQ=255) cTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAAtgct < 1:580115/150‑1 (MQ=255) aTCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGgcgc > 1:995189/1‑150 (MQ=255) aTCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGAACTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGgcgc < 1:247037/150‑1 (MQ=255) cGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGACCAAGGCACGAATGCTGCCTGGGCGccc < 2:46988/150‑1 (MQ=255) ccTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGCCCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCCCTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGtt < 2:435737/150‑1 (MQ=255) ccTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGtt > 1:799783/1‑150 (MQ=255) ccTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGtt > 1:557255/1‑150 (MQ=255) ggTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCa < 1:136336/150‑1 (MQ=255) tGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGAAAAAGCACCACTGGCCAAGGCACGAATTCTGCCTGCGCGCCCGAGCCCCGTTCCCAGCACATGt < 2:547411/150‑1 (MQ=255) gCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGGGCCCCGTTCCCAGCACATGtt < 1:994772/150‑1 (MQ=255) aGATCGATGTGGCTCGGGTCAACGCCGGGAACGAAGGGCTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATCGCCGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGTCGCCCGAGCCCCCTTCCCAGCACATGTTGc > 2:525603/1‑150 (MQ=255) gATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCa < 2:1109047/150‑1 (MQ=255) aatgtcgcgagcacgccatcgagcatggaggtctacgccttcgttcccggcgttgacccgagcgacatTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTc > 1:668460‑M2/69‑150 (MQ=255) gtcgcgagcacgccatcgagcatggaggtctacgccttcgttcccggcgttgacccgagcgacatTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTg < 1:941736‑M2/76‑1 (MQ=255) gtcgcgagcacgccatcgagcatggaggtctacgccttcgttcccggcgttgacccgagcgacatTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTg > 2:941736‑M2/66‑141 (MQ=255) GCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTg < 1:321166‑M1/150‑1 (MQ=255) aaCGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGAGCTtctc < 2:113358/150‑1 (MQ=255) aaCGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGAGCTtctc < 2:995189/150‑1 (MQ=255) cGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGAGCTTCTCGAACt > 1:892907/1‑150 (MQ=255) ggAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGAGCTTCTCGAACTCg < 2:321166/150‑1 (MQ=255) aaGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGc < 2:824150/96‑1 (MQ=255) aaGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGc > 1:824150/1‑96 (MQ=255) aGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGAAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCACGAGCCCCGTTCCCAGCACATGTCGCAGTTCGCGCTGGAGCTTCTCGAACTCGGCAATCg > 1:570520/1‑150 (MQ=255) gTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAgg < 2:998486/65‑1 (MQ=255) gTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAgg > 1:998486/1‑65 (MQ=255) tCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGAGCTTCTCGAACTCGGCAATCGGATCGCTCGAc > 2:199733/1‑150 (MQ=255) ccATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGCGCTTCTCGAACTCGGCAATCGGATCGCTCGACa > 1:15725/1‑150 (MQ=255) aTGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGAGCTTCTCGAACTCGGCAATc > 2:700443/1‑135 (MQ=255) aTGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGAGCTTCTCGAACTCGGCAATc < 1:700443/135‑1 (MQ=255) gCTCGATCGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCGAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTCGCAGTTCGCGCTGGAGCTTCTCGAACTCGGCAATCGGATCGCTCGACAGAtt < 2:570520/150‑1 (MQ=255) aTGGCGTGCTCGCGACATTGATTGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGAGCTTCTCGAACTCGGCAATCGGATCGCTCGACAGATTaagaa < 2:557255/150‑1 (MQ=255) tGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGAGCTTCTCGAACTCGGCAATCGGATCGCTCGACAGATTaagaag < 1:4836/150‑1 (MQ=255) ggCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGAGCTTCTCGAACTCGGCAATCGGATCGCTCGACAGATTAAGAAgg < 2:246246/150‑1 (MQ=255) cGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGAGCTTCTCGAACTCGGCAATCGGATCGCTCGACAGATTAAGAAGGGa < 2:892907/150‑1 (MQ=255) atTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGAGCTTCTCGAACTCGGCAATCGGa > 2:627459‑M2/3‑115 (MQ=255) atTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGAGCTTCTCGAACTCGGCAATCGGa < 1:627459‑M2/113‑1 (MQ=255) | GGAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGAGCTTCTCGAACTCGGCAATCGGATCGCTCGACAGATTAAGAAGGGA > NC_002947/3750089‑3750373 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |