New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3783067 =	50 (1.150)	3 (0.080)	3/234	NT	7.1%	coding (115/771 nt)	nikD	nickel ABC transporter ATP‑binding protein
	?	NC_002947	3783174 =	33 (0.830)					coding (222/771 nt)	nikD	nickel ABC transporter ATP‑binding protein

CGCCTGGACCCTGCACAGGAGCGCCATTGAATGAGTCCGTCGGTGCTTGAAATCCGTGGCCTTCGCATAGAAACCCAGGCCGGCGTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACTGCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCA  >  NC_002947/3782923‑3783202                                                                                                                                                 |                                                                                                                                        atgcgcgcccgtgctaccgcgctggtgatgcctcgttgcctgagcgtttcgatggcatggctggccatgttgcgcaccgggttgaaggcgctgcgcgggttttgcagcaccaggctggtcaggcgacctctgacactgcttgcagccagc                                                                                                                                    >  1:975635‑M1/145‑150 (MQ=255)   ccTGGACCCTGCACAGGAGCGCCATTGAATGAGTCCGTCGGTGCTTGAAATCCGTGGCCTTCGCATAGAAACCCAGGCCGGCGTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCgg                                                                                                                                  >  1:492963/1‑150 (MQ=255)     gcgcccgtgctaccgcgctggtgatgcctcgttgcctgagcgtttcgatggcatggctggccatgttgcgcaccgggttgaaggcgctgcgcgggttttgcagcaccaggctggtcaggcgacctctgacactgcttgcaGCCAGCGGct                                                                                                                                >  1:284479‑M1/141‑150 (MQ=255)       gACCCTGCACAGGAGCGCCATTGAATGAGTCCGTCGGTGCTTGAAATCCGTGGCCTTCGCATAGAAACCCAGGCCGGCGTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGctct                                                                                                                              <  1:164064/150‑1 (MQ=255)        aCCCTGCACAGGAGCGCCATTGAATGAGTCCGTCGGTGCTTGAAATCCGTGGCCTTCGCATAGAAACCCAGGCCGGCGTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTg                                                                                                                             <  1:384821/150‑1 (MQ=255)          ccTGCACAGGAGCGCCATTGAATGAGTCTGTCGGTGCTTGAAATCCGTGGCCTTCGCATAGAAACCCAGGCCGGCGTGCTGGTGCATGACGTTGACTTGAAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGc                                                                                                                           >  2:582039/1‑150 (MQ=255)          ccTGCACAGGAGCGCCATTGAATGAGTCCGTCTGTGCTTGAAATCCGTGTCCTTCGCATAGAAACCCAGGCCGGCGTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCTGTGCCAGCGGCTCTGGc                                                                                                                           <  2:910644/150‑1 (MQ=255)          ccTGCACAGGAGCGCCATTGAATGAGTCCGTCGGTGCTTGAAATCCGTGGCCTTCGCATAGAAACCCAGGCCGGCGTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGc                                                                                                                           >  2:146571/1‑150 (MQ=255)           cTGCACAGGAGCGCCATTGAATGAGTCCGTCGGTGCTTGAAATCCGTGGCCTTCGCATAGAAACCCAGGCCGGCGTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCa                                                                                                                          >  1:349422/1‑150 (MQ=255)                caGGAGCGCCATTGAATGAGTCCGTCGGTGCTTGAAATCCGTGGCCTTCGCATAGAAACCCAGGCCGGCGTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATcc                                                                                                                     <  1:1028013/150‑1 (MQ=255)                 aGGAGCGCCATTGAATGAGTCCGTCGGTGCTTGAAATCCGTGGCCTTCGCATAGAAACCCAGGCCGGCGTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATcca                                                                                                                    >  1:119241/1‑149 (MQ=255)                  ggAGCGCCATTGAATGAGTCCGTCGGTGCTTGAAATCCGTGGCCTTCGCATAGAAACCCAGGCCGGCGTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCt                                                                                                                   <  2:1074089/150‑1 (MQ=255)                  ggAGCGCCATTGAATGAGTCCGTCGGTGCTTGAAATCCGTGGCCTTCGCATAGAAACCCAGGCCGGCGTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCt                                                                                                                   <  1:394647/150‑1 (MQ=255)                    aGCGCCATTGAATGAGTCCGTCGGTGCTTGAAATCCGTGGCCTTCGCATAGAAACCCAGGCCGGCGTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCa                                                                                                                 <  1:849272/150‑1 (MQ=255)                          aTTGAATGAGTCCGTCGGTGCTTGAAATCCGTGGCCTTCGCATAGAAACCCAGGCCGGCGTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCaaa                                                                                                                        >  2:915343/1‑137 (MQ=255)                          aTTGAATGAGTCCGTCGGTGCTTGAAATCCGTGGCCTTCGCATAGAAACCCAGGCCGGCGTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCaaa                                                                                                                        <  1:915343/137‑1 (MQ=255)                                tGAGTCCGTCGGTGCTTGAAATCCGTGGCCTTCGCATAGAAACCCAGGCCGGCGTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCt                                                                                                     <  1:1021803/150‑1 (MQ=255)                                     ccGTCGGTGCTTGAAATCCGTGGCCTTCGCATAGAAACCCAGGCCGGCGTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTc                                                                                                <  1:146571/150‑1 (MQ=255)                                       gTCGGTGCTTGAAATCCGTGGCCTTCGCATAGAAACCCAGGCCGGCGTACTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGa                                                                                              >  2:440194/1‑150 (MQ=255)                                              cTTGAAATCCGTGGCCTTCGCATAGAAAACCAGGCCGGCGTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTa                                                                                       >  1:113005/1‑150 (MQ=255)                                               ttGAAATCCGTGGCCTTCGCATAGAAACCCAGGCCGGCGTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCCGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTac                                                                                      >  1:545240/1‑150 (MQ=255)                                               ttGAAATCCGTGGCCTTCGCATAGAAACCCAGGCCGGCGTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTac                                                                                      >  1:1038882/1‑150 (MQ=255)                                               ttGAAATCCGTGGCCTTCGCATAGAAACCCAGGCCGGCGTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTac                                                                                      >  1:1037007/1‑150 (MQ=255)                                                   aaTCCGTGGCCTTCGCATAGAAACCCAGGCCGGCGTGCTGGGGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTaccacc                                                                                  >  1:753006/1‑150 (MQ=255)                                                           gCCTTCGCATAGAAACCCAGGCCGGCGTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCg                                                                          >  1:316956/1‑150 (MQ=255)                                                            ccTTCGCATAGAAACCCAGGCCGGCGTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGc                                                                         <  1:1065478/150‑1 (MQ=255)                                                              ttCGCATAGAAACCCAGGCCGGCGTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGccc                                                                       >  2:474907/1‑150 (MQ=255)                                                              ttCGCATAGAAACCCAGGCCGGCGTGCTGGTGCATGACGTTGACTGGCATCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGccc                                                                       >  2:433108/1‑150 (MQ=255)                                                                   aTAGAAACCCAGGCCGGCGTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCAcc                                                                  >  1:651476/1‑150 (MQ=255)                                                                   aTAGAAACCCAGGCCGGCGTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTAGCCCGCAcc                                                                  >  1:187301/1‑150 (MQ=255)                                                                           ccAGGCCGGCGTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACa                                                          >  1:1066116/1‑150 (MQ=255)                                                                           ccAGGCCGGCGTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACa                                                          >  1:848534/1‑150 (MQ=255)                                                                           ccAGGCCGGCGTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACa                                                          >  2:547931/1‑150 (MQ=255)                                                                                 cGGCGTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGc                                                                                         <  1:210790/113‑1 (MQ=255)                                                                                 cGGCGTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGc                                                                                         >  2:210790/1‑113 (MQ=255)                                                                                  ggcctGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGACTCGCCCGCACCCAAGGACAActgctg                                                   <  2:651476/146‑1 (MQ=255)                                                                                     gTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACTGCTGCTc                                                >  1:452638/1‑150 (MQ=255)                                                                                        gcgctgcgcgggttttgcagcaccaggctggtcaggcgacctctgacactgcttgcaGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACTGCTGCTCGAc                                             <  1:961041‑M1/93‑1 (MQ=255)                                                                                           gTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCTACCGTCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACTGCTGCTCGACGGc                                          <  1:290852/150‑1 (MQ=255)                                                                                                  aCGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACTGCTGCTCGACGGCCAGCCgc                                   <  1:547931/150‑1 (MQ=255)                                                                                                    gTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACTGCTGCTCGACGGCCAGCCgctg                                 >  2:845629/1‑150 (MQ=255)                                                                                                      ttgcagcaccaggctggtcaggcgacctctgacactgcttgcaGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACTGCTGCTCGACGGCCAGCCgctggc                               >  2:64877‑M1/44‑150 (MQ=255)                                                                                                       gACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTAGCCCGCACCCAAGGACAACTGCTGCTCGACGGCCAGCCgctggct                              <  2:187301/150‑1 (MQ=255)                                                                                                           tGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACTGCTGCTCGACGGCCAGCCGCTGGCTGCaa                          <  2:1037007/150‑1 (MQ=255)                                                                                                              aGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACTGCTGCTCGACGGCCAGCCGCTGGCTGCAAGCa                       <  1:440194/150‑1 (MQ=255)                                                                                                                aggctggtcaggcgacctctgacactgcttgcaGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACTGCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAgt                     >  2:961041‑M1/34‑150 (MQ=255)                                                                                                                    gccgcGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTac                                                                                      >  2:693224/1‑81 (MQ=255)                                                                                                                    gccgcGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTac                                                                                      <  1:693224/81‑1 (MQ=255)                                                                                                                       gcggcgAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACTGCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCagag              <  2:113005/150‑1 (MQ=255)                                                                                                                            gAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACTGCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGc         <  2:119241/150‑1 (MQ=255)                                                                                                                            gAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACTGCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGc         <  2:1038882/150‑1 (MQ=255)                                                                                                                                 cTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACTGCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGAc    <  1:582039/150‑1 (MQ=255)                                                                                                                                 cTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACTGCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGAc    <  1:1100359/150‑1 (MQ=255)                                                                                                                                   gCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACTGCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCa  >  1:995337/1‑150 (MQ=255)                                                                                                                                   gCACGTTGGTCGGCGCCAGCGGCTCTGGCACATCCCTCAGCTGCCTTGGCCTGCTCGACCTGCTACCCCCTGGCCTCGCCCGCACCCAAGGACAACTGCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCa  <  2:900880/150‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                        CGCCTGGACCCTGCACAGGAGCGCCATTGAATGAGTCCGTCGGTGCTTGAAATCCGTGGCCTTCGCATAGAAACCCAGGCCGGCGTGCTGGTGCATGACGTTGACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACTGCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCA  >  NC_002947/3782923‑3783202

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.