New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3783067 =	50 (1.150)	3 (0.080)	3/234	NT	7.1%	coding (115/771 nt)	nikD	nickel ABC transporter ATP‑binding protein
	?	NC_002947	3783174 =	33 (0.830)					coding (222/771 nt)	nikD	nickel ABC transporter ATP‑binding protein

GACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAAAACCCGCGCAGCGCCTTCAACCCGGTGCGCAACATGGCCAGCCATGCCATCGAAACGCTCAGGCAACGAGGCATCACCAGCGCGGTAGCACGGGCGCGCAT  >  NC_002947/3783025‑3783317                                                                                                                                                       |                                                                                                                                                gACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTAGCCCGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCgctggct                                                                                                                                                 <  2:187301/150‑1 (MQ=255)     tGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCaa                                                                                                                                             <  2:1037007/150‑1 (MQ=255)        aGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCa                                                                                                                                          <  1:440194/150‑1 (MQ=255)          aggctggtcaggcgacctctgacactgcttgcaGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAgt                                                                                                                                        >  2:961041‑M1/34‑150 (MQ=255)                 gcggcgAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCagag                                                                                                                                 <  2:113005/150‑1 (MQ=255)                      gAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGc                                                                                                                            <  2:1038882/150‑1 (MQ=255)                      gAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGc                                                                                                                            <  2:119241/150‑1 (MQ=255)                           cTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGAc                                                                                                                       <  1:1100359/150‑1 (MQ=255)                           cTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGAc                                                                                                                       <  1:582039/150‑1 (MQ=255)                             gCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCa                                                                                                                     >  1:995337/1‑150 (MQ=255)                             gCACGTTGGTCGGCGCCAGCGGCTCTGGCACATCCCTCAGCTGCCTTGGCCTGCTCGACCTGCTACCCCCTGGCCTCGCCCGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCa                                                                                                                     <  2:900880/150‑1 (MQ=255)                                  actgcttgcagccagcggctggccgtcgagcagcagttgtccttgggtgcgggcgaggccaggtggtagcaggtcgagcaagccaaggcagctgagggatttgccagagccgctggcTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCt                                                                                                                 >  2:961041‑M2/118‑150 (MQ=255)                                            gccagcggctggccgtcgagcagcagttgtccttgggtgcgggcgaggccaggtggtagcaggtcgagcaagccaaggcagctgagggatttgccagagccgctggcTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCaa                                                                                                       >  2:64877‑M2/108‑150 (MQ=255)                                            CCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCaaa                                                                                                      <  2:547205‑M1/150‑1 (MQ=255)                                                   CTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAAAACCcgcg                                                                                               <  1:94832‑M1/150‑1 (MQ=255)                                                    TCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAAAACCCgcgc                                                                                              <  2:787665‑M1/150‑1 (MQ=255)                                                          gtcgagcagcagttgtccttgggtgcgggcgaggccaggtggtagcaggtcgagcaagccaaggcagctgagggatttgccagagccgctggcTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAAAACCCGCGCAgcgc                                                                                         <  1:961041‑M2/57‑1 (MQ=255)                                                           aaTCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAAAACCCGCGCAGCGCCt                                                                                       <  1:845629/150‑1 (MQ=255)                                                            aTCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAAAACCCGCGCAGCGCCtt                                                                                      >  1:195832/1‑150 (MQ=255)                                                             tCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAAAACCCGCGCAGCGCCTTc                                                                                     <  2:995337/150‑1 (MQ=255)                                                               ccTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAAAACCCGCGCAGCGCCTTCaa                                                                                   <  2:753006/150‑1 (MQ=255)                                                                   aGCTGCCTTGGCTTGCTCGACCTGCTCCCCCCGGGCCTCGCCCGCACTCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAAAACCCGCGCAGCGCCTTCatgccg                                                                               <  2:545240/150‑6 (MQ=255)                                                                        ccTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCACCCTGTTGCTGCAAAACCCGCGCAGCGCCTTCAACCCGGTgcc                                                                          >  2:400929/1‑149 (MQ=255)                                                                         cTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGa                                                                                                                        >  1:854505/1‑103 (MQ=255)                                                                         cTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGa                                                                                                                        <  2:854505/103‑1 (MQ=255)                                                                                tGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAAAACCCGCGCAGCGCCTTCAACCCGGTGCGCAACATgg                                                                  <  1:474907/150‑1 (MQ=255)                                                                                   tCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAAAACCCGCGCAGCGCCTTCAACCCGGTGCGCAACATGgcca                                                               >  2:385988/1‑150 (MQ=255)                                                                                             accaccTGGCCTCGCCCGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAAAACCCGCGCAGCGCCTTCAACCCGGTGCGCAACATGGCCAgccatgccat                                                     <  2:452638/150‑1 (MQ=255)                                                                                                     gCCTCGCCCGCACCCAAGGACAACTCGCCG‑TCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAAAACCCGCGCAGCGCCTTCAACCCGGTGCGCAACATGGCCAGCCATGCCATCGAAACGc                                             >  1:1050909/1‑150 (MQ=255)                                                                                                     gCCTCGCCCGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCaaa                                                                                                      <  1:743368/93‑1 (MQ=255)                                                                                                     gCCTCGCCCGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCaaa                                                                                                      >  2:743368/1‑93 (MQ=255)                                                                                                        tCGCCCGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAAAACCCGCGCAGCGCCTTCAACCCGGTGCGCAACATGGCCAGCCATGCCATCGAAACGCTCa                                          <  1:787665/150‑1 (MQ=255)                                                                                                           cccGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAAAACCCGCGCAGCGCCTTCAACCCGGTGCGCAACATGGCCAGCCATGCCATCGAAACGCTCAGGc                                       >  1:708248/1‑150 (MQ=255)                                                                                                            ccGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAAAACCCGCGCAGCGCCTTCAACCCGGTGCGCAACATGGCCAGCCATGCCATCGAAACGCTCAGGCa                                      >  1:103610/1‑150 (MQ=255)                                                                                                             cGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAAAACCCGCGCAGCGCCTTCAACCCGGTGCGCAACATGGCCAGCCATGCCATCGAAACGCTCAGGCaa                                     <  2:848534/150‑1 (MQ=255)                                                                                                                  ccAAGGACAACT‑GCTGCTCGACGGCCAGCCGCGGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAACACCCGCGCAGCGCCTTCAACCCGGTGCGCAACATGGCCAGCCATGCCATCGAAACGCTCAGGCAACGAgg                                >  2:497209/1‑150 (MQ=255)                                                                                                                     aGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAAAACCCGCGCAGCGCCTTCAACCCGGTGCGCAACATGGCCAGCCATGCCATCGAAACGCTCAGGCAACGAGGCAt                             <  2:94832/150‑1 (MQ=255)                                                                                                                       gACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAAAACCCGCGCAGCGCCTTCAACCCGGTGCGCAACATGGCCAGCCATGCCATCGAAACGCTCAGGCAACGAGGCATCa                           >  2:218965/1‑150 (MQ=255)                                                                                                                       gACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCGGCAAAAAACCCGCAACAACTCCAACCCGGGGCGCAACATGGCCAGCCATGCCATCGAAACGCTAAGGCAACGAGGCATCa                           >  1:356733/1‑150 (MQ=255)                                                                                                                            ct‑gctgCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAAAACCCGCGCAGCGCCTTCAACCCGGTGCGCAACATGGCCAGCCATGCCATCGAAACGCTCAGGCAACGAGGCATCACCAgc                      <  2:349422/150‑1 (MQ=255)                                                                                                                             t‑gctgcTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAAAACCCGCGCAGCGCCTTCAACCCGGTGCGCAACATGGCCAGCCATGCCATCGAAACGCTCAGGCAACGAGGCATCACCAgcg                     >  2:1037907/1‑150 (MQ=255)                                                                                                                                ctgctCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAAAACCCGCGCAGCGCCTTCAACCCGGTGCGCAACATGGCCAGCCATGCCATCGAAACGCTCAGGCAACGAGGCATCACCAGcgcg                   <  1:433108/150‑1 (MQ=255)                                                                                                                                          gCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAAAACCCGCGCAGCGCCTTCAACCCGGTGCGCAACATGGCCAGCCATGCCATCGAAACGCTCAGGCAACGAGGCATCACCAGCGCGGTAGCACggg         >  1:602607/1‑150 (MQ=255)                                                                                                                                           ccAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCt                                                                                                                 <  1:766635/45‑1 (MQ=255)                                                                                                                                           ccAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCt                                                                                                                 >  2:766635/1‑45 (MQ=255)                                                                                                                                           ccAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAAAACCCGCGCAGCGCCTTCAACCCGGTGCGCAACATGGCCAGCCATGCCATCGAAACGCTCAGGCAACGAGGCATCACCAGCGCGGTAGCACGGgc        >  1:1044584/1‑150 (MQ=255)                                                                                                                                             agccgctggcTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAAAACCCGCGCAGCGCCTTCAACCCGGTGCGCAACATGGCCAGCCATGCCATCGAAACGCTCAGGCAACGAGGCATCACCAGCGCGGTAGCACGGgcgc      >  1:284479‑M2/11‑150 (MQ=255)                                                                                                                                                 gctggcTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAAAACCCGCGCAGCGCCTTCAACCCGGTGCGCAACATGGCCAGCCATGCCATCGAAACGCTCAGGCAACGAGGCATCACCAGCGCGGTAGCACGGGCGCGCAt  >  1:975635‑M2/7‑150 (MQ=255)                                                                                                                                                       |                                                                                                                                                GACTTGCAGCTGCGCCGCGGCGAAGTCTGCACGTTGGTCGGTGCCAGCGGCTCTGGCAAATCCCTCAGCTGCCTTGGCTTGCTCGACCTGCTACCACCTGGCCTCGCCCGCACCCAAGGACAACT‑GCTGCTCGACGGCCAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAAAACCCGCGCAGCGCCTTCAACCCGGTGCGCAACATGGCCAGCCATGCCATCGAAACGCTCAGGCAACGAGGCATCACCAGCGCGGTAGCACGGGCGCGCAT  >  NC_002947/3783025‑3783317

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.