New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3795181	30 (0.690)	3 (0.070)	3/246	NT	9.5%	coding (1316/1884 nt)	fcs	feruloyl‑CoA‑synthetase
	?	NC_002947	= 3795221	28 (0.670)					coding (1276/1884 nt)	fcs	feruloyl‑CoA‑synthetase

ATACCCCGGACGAAAGTTTGAAGTCCTCAGCGATACGGCCATCGAACATCAGGCCAAGCTCGGGCTGCCTGGCATCGGCCAGCTTCAACGCGTCGCCCGAACAGTAGAAGCCCTCCTCGTCGAACGCCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGCGCCTCGAGCTTGTCGCCCACCGGCACCAGCTTCACTTCGCAGCCAGGTGCCGGCAGCCCGACATAGCCGGCCATCGACAAAGGCCCGGTGGTGAAGGTGCACGATGGC  >  NC_002947/3795035‑3795330                                                                                                                                                   |                                                                                                                                                      aTACCCCGGACGAAAGTTTGAAGTCCTCAGCGATACGGCCATCGAACATCAGGCCAAGCTCGGGCTGCCTGGCATCGGCCAGCTTCAACGCGTCGCCCGAACAGTAGAAGCCCTCCTCGTCGAACGCCTCGGCGGTCTGCTGCGGCGAgc                                                                                                                                                    <  2:545525/150‑1 (MQ=255)     cccGGGCGAAAGTTTGAAGTCCTCAGCGATACGGCCATCGAACATCAGGCCAAGCTCGGGCTGCCTGGCATCGGCCAGCTTCAACGCGTCGCCCGAACAGTAGAAGCCCTCCTCGTCGAACGCCTCGGCGGTCTGCTGCGGCGAGCGCCa                                                                                                                                                >  2:885134/1‑150 (MQ=255)     cccGGACGAAAGTTTGAAGTCCTCAGCGATACGGCCATCGAACATCAGGCCAAGCTCGGGCTGCCTGGCATCGGCCAGCTTCAACGCGTCGCCCGAACAGTAGAAGCCCTCCTCGTCGAACGCCTCGGCGGTCTGCTGCGGCGAGCGCCa                                                                                                                                                <  2:648265/150‑1 (MQ=255)                 tttGAAGTCCTCAGCGATACGGCCATCGAACATCAGGCCAAGCTCGGGCTGCCTGGCATCGGCCAGCTTCAACGCGTCGCCCGAACAGTAGAAGCCCTCCTCGTCGAACGCCTCGGCGGCCTGCTGCGGCGAGCGCCAGTAGCCCGGCac                                                                                                                                    >  2:134553/1‑149 (MQ=255)                   tGAAGTCCTCAGCGATACGGCCATCGAACATCAGGCCAAGCTCGGGCTGCCTGGCATCGGCCAGCTTCAACGCGTCGCCCGAACAGTAGAAGCCCTTACTGTCGATCGCCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGa                                                                                                                                  <  1:29097/150‑1 (MQ=255)                       gTCCTCAGCGATACGGCCATCGAACATCAGGCCAAGCTCGGGCTGCCTGGCATCGGCCAGCTTCAACGCGTCGCCCGAACAGTAGAAGCCCTCCTCGTCGAACGCCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATg                                                                                                                              <  1:831612/150‑1 (MQ=255)                        tCCTCAGCGATACGGCCATCGAACATCAGGCCAAGCTCGGGCTGCCTGGCATCGGCCAGCTTCAACGCGTCGCCCGAACAGTAGAAGCCCTCCTCGTCGAACGCCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGc                                                                                                                             >  2:541089/1‑150 (MQ=255)                          cTCAGCGGTACGGCGATCGAACATCAGGCCAAGCTCGGGCTGCCTGGCATCGGCCAGCTTCAACGCGTCGCCCGAACAGTAGAAGCCCTCCTCGTCGAACGCCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCgg                                                                                                                           <  2:5388/150‑1 (MQ=255)                                gATACGGCCATCGAACATCAGGCCAAGCTCGGGCTGCCTGGCATCGGCCAGCTTCAACGCGTCGCCCGAACAGTAGAAGCCCTCCTCGTCGAACGCCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACg                                                                                                                     <  1:885134/150‑1 (MQ=255)                                   aCGGCCATCGAACATCAGGCCAAGCTCGGGCTGCCTGGCATCGGCCAGCTTCAACGCGTCGCCCGAACAGTAGAAGCCCTCCTCGTCGAACGCCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGaa                                                                                                                  <  2:1079632/150‑1 (MQ=255)                                       ccATCGAACATCAGGCCAAGCTCGGGCTGCCTGGCATCGGCCAGCTTCAACGCGTCGCCCGAACAGTAGAAGCCCTCCTCGTCGAACGCCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGc                                                                                                              >  1:893451‑M2/1‑149 (MQ=255)                                         aTCGAACATCAGGCCAAGCTCGGGCTGCCTGGCATCGGCCAGCTTCAACGCGTCGCCCGAACAGTAGAAGCCCTCCTCGTCGAACGCCTCGGCGGTCTGCTGCGGCGcgcttccgtggcccgcatatcatgccgggctactggcgctcgc                                                                                                            <  2:1100291‑M1/150‑44 (MQ=255)                                          tCGAACATCAGGCCAAGCTCGGGCTGCCTGGCATCGGCCAGCTTCAACGCGTCGCCCGAACAGTAGAAGCCCTCCTCGTCGAACGCCTCGGCGGTCTGCTGCGGCGcgcttccgtggccagcatatcatgccgggctactggcgctcgcc                                                                                                           >  1:1093500‑M1/1‑106 (MQ=255)                                          tCGAACATCAGGCCAAGCTCGGGCTGCCTGGCATCGGCCAGCTTCAACGCGTCGCCCGAACAGTAGAAGCCCTCCTCGTCGAACGCCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGcgcc                                                                                                           <  1:103256‑M2/150‑5 (MQ=255)                                             aaCATCAGGCCAAGCTCGGGCTGCCTGGCATCGGCCAGCTTCAACGCGTCGCCCGAACAGTAGAAGCCCTCCTCGTCGAACGCCTCGGCGGTCTGCTGCGGCGcgcttccgtggcccgcatatcatgccgggctactggcgctcgccgca                                                                                                        <  2:1093500‑M1/150‑48 (MQ=255)                                                aTCAGGCCAAGCTCGGGCTGCCTGGCATCGGCCAGCTTCAACGCGTCGCCCGAACAGTAGAAGCCCTCCTCGTCGAACGCCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGCGCCTCGAGc                                                                                                     >  1:678681/1‑150 (MQ=255)                                                aTCAGGCCAAGCTCGGGCTGCCTGGCATCGGCCAGCTTCAACGCGTCGCCCGAACAGTAGAAGCCCTCCTCGTCGAACGCCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGCGCCTCGAGc                                                                                                     >  1:388323/1‑150 (MQ=255)                                                     gCCAAGCTCGGGCTGCCTGGCATCGGCCAGCTTCAACGCGTCGCCCGAACAGTAGAAGCCCTCCTCGTCGAACGCCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGCGCCTCGAGCTTGTc                                                                                                >  1:339063/1‑150 (MQ=255)                                                     gCCAAGCTCGCGCTGCCTGGCATCGGCCAGCTTCAGCGCGTCGCCCGAACAGTAGAAGCCCTCCTCGTCGAACGCCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATAGGCGGGCCACGGAAGCGCCCCTCGAGCTTGTc                                                                                                >  2:12929/1‑150 (MQ=255)                                                                gCTGCCTGGCATCGGCCAGCTTCAACGCGTCGCCCGAACAGTAGAAGCCCTCCTCGTCGAACGCCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGCGCCTCGAGCTTGTCGCCCAcc                                                                                         <  1:733623/146‑1 (MQ=255)                                                                gCTGCCTGGCATCGGCCAGCTTCAACGCGTCGCCCGAACAGTAGAAGCCCTCCTCGTCGAACGCCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGCGCCTCGAGCTTGTCGCCCAcc                                                                                         >  2:733623/1‑146 (MQ=255)                                                                gCTGCCTGGCATCGGCCAGCTTCAACGCGTCGCCCGAACAGTAGAAGCCCTCCTCGTCGAACGCCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGCGCCTCGAGCTTGTCGCCCACCGGCa                                                                                     >  1:1092283/1‑150 (MQ=255)                                                                         cATCGGCCAGCTTCAACGCGTCGCCCGAACAGTAGACGCCCTCCTCGTCGAACGCCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGCGCCTCGAGCTTGTCGCCCACCGGCACCAGCTTCa                                                                            <  2:4834/150‑1 (MQ=255)                                                                         cATCGGCCAGCTTCAACGCGTCGCCCGAACAGTAGAAGCCCTCCTCGTCGAACGCCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGCGCCTCGAGCTTGTCGCCCACCGGCACCAGCTTCa                                                                            <  1:1083577/150‑1 (MQ=255)                                                                                          gcgTCGCCCGAACAGTAGAAGCCCTCCTCGTCGAACGCCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGCGCCTCGAGCTTGTCGCCCACCGGCACCAGCTTCACTTCGCAGCCAGGTGcc                                                           <  2:103256/150‑1 (MQ=255)                                                                                                cccGAACAGTAGAAGCCCTCCTCGTCGAACGCCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGCGCCTCGAGCTTGTCGCCCACCGGCACCAGCTTCACTTCGCAGCCAGGTGCCGGCAGc                                                     <  2:762799/150‑1 (MQ=255)                                                                                                cccGAACAGTAGAAGCCCTCCTCGTCGAACGCCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGCGCCTCGAGCTTGTCGCCCACCGGCACCAGCTTCACTTCGCAGCCAGGTGCCGGCAGc                                                     >  2:636175/1‑150 (MQ=255)                                                                                                 ccGAACAGTAGAAGCCCTCCTCGTCGAACGCCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGCGCCTc                                                                                                         >  1:73280/1‑97 (MQ=255)                                                                                                 ccGAACAGTAGAAGCCCTCCTCGTCGAACGCCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGCGCCTc                                                                                                         <  2:73280/97‑1 (MQ=255)                                                                                                    aaCAGTAGAAGCCCTCCTCGTCGAACGCCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGCGCCTCGAGCTTGTCGCCCACCGGCACCAGCTTCACTTCGCAGCCAGGTGCCGGCAGCCCGa                                                 >  1:83854/1‑150 (MQ=255)                                                                                                                    ctcGTCGAACGCCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGCGCCTCGAGCTTGTCGCCCACCGGCACCAGCTTCACTTCGCAGCCAGGTGCCGGCAGCCCGACATAGCCGGCCATCGa                                 <  2:39905/150‑1 (MQ=255)                                                                                                                    ctcGTCGAACGCCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGCGCCTCGAGCTTGTCGCCCACCGGCACCAGCTTCACTTCGCAGCCAGGTGCCGGCAGCCCGACATAGCCGGCCATCGa                                 >  1:935767/1‑150 (MQ=255)                                                                                                                       gtcgAACGCCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGCGCCTCGAGCTTGTCGCCCACCGGCACCAGCTTCACTTCGCAGCGAGGTGCCGGCAGCCCGACATAGCCGGCCATCGACaa                              >  2:399171/1‑150 (MQ=255)                                                                                                                            ccGCCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGCGCCTCGAGCTTGTCGCCCACCGGCACCAGCTTCACTTCGCAGCGAGGTGCGCGCGGCCCGACATAGCCGGCCATCGACAAAGGcc                         >  1:588406/2‑150 (MQ=255)                                                                                                                                cTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGGCCGCTATGGGGGCGCGCCTCGAGCGTGGCGCCCACCGGCACCAGCTTACCTTCGCAGCCAGGTGCCGGCAGCCCGACATAGCCGGCCATCGACAAAGGCCCggg                     >  1:577757/1‑149 (MQ=255)                                                                                                                                           gctgcGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGCGCCTCGAGCTTGTCGCCCACCGGCACCAGCTTCACTTCGCAGCCAGGTGCCGGCAGCCCGACATAGCCGGCCATCGACAAAGGCCCGGTGGTGAAGGTGc          <  1:490187/150‑1 (MQ=255)                                                                                                                                             tgcGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGcgccgcagcagaccgccgaggcgttcgacgaggagggcttctactgttcgggcgacgcgttgaagctggccgatgccaggcagcccgagcttggcctgatgtt        <  2:1093500‑M2/150‑104 (MQ=255)                                                                                                                                                ggcgcgcttccgtggcccgcatatcatgccgggctactggcgctcgccgcagcagaccgccgaggcgttcgacgaggagggcttctactgttcgggcgacgcgttgaagctggccgatgccaggcagcccgagcttggcctgatgttcga     <  1:103256‑M1/150‑147 (MQ=255)                                                                                                                                                ggcgAGCGCCAGTAGCCCGGCATGATATGCTGGCCACGGAAGCGcgccgcagcagaccgccgaggcgttcgacgaggagggcttctactgttcgggcgacgcgttgaagctggccgatgccaggcagcccgagcttggcctgatgttcga     >  1:1093500‑M2/1‑44 (MQ=255)                                                                                                                                                 gcgAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGcgccgcagcagaccgccgaggcgttcgacgaggagggcttctactgttcgggcgacgcgttgaagctggccgatgccaggcagcccgagcttggcctgatgttcgat    <  2:1100291‑M2/150‑108 (MQ=255)                                                                                                                                                 gcgAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGCGCCTCGAGCTTGTCGCCCACCGGCACCAGCTTCACTTCGCAGCCAGGTGCCGGCAGCCCGACATAGCCGGCCATCGACAAAGGCCCGGTGGTGAAGGTGCACGATg    >  2:1046554/1‑150 (MQ=255)                                                                                                                                                   gcgcttccgtggcccgcatatcatgccgggctactggcgctcgccgcagcagaccgccgaggcgttcgacgaggagggcttctactgttcgggcgacgcgttgaagctggccgatgccaggcagcccgagcttggcctgatgttcgatgg  >  1:893451‑M1/1‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                      ATACCCCGGACGAAAGTTTGAAGTCCTCAGCGATACGGCCATCGAACATCAGGCCAAGCTCGGGCTGCCTGGCATCGGCCAGCTTCAACGCGTCGCCCGAACAGTAGAAGCCCTCCTCGTCGAACGCCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGCGCCTCGAGCTTGTCGCCCACCGGCACCAGCTTCACTTCGCAGCCAGGTGCCGGCAGCCCGACATAGCCGGCCATCGACAAAGGCCCGGTGGTGAAGGTGCACGATGGC  >  NC_002947/3795035‑3795330

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.