New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3989042	40 (0.920)	4 (0.100)	4/242	NT	9.6%	coding (1516/2085 nt)	oplA	5‑oxoprolinase A
	?	NC_002947	= 3989064	37 (0.900)					coding (1538/2085 nt)	oplA	5‑oxoprolinase A

TGCACGTGGTGCGCCTGGCCGAAGAAATTGGCATGCACACCGTGCTGATCCCCAAGGTGGCCTCGGGCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGGAGATGCGCTACCTGGGGCAGATT  >  NC_002947/3988908‑3989191                                                                                                                                       |                                                                                                                                                      tGCACGTGGTGCGCCTGGCCGAAGAAATTGGCATGCACACCGTGCTGATCCCCAAGGTGGCCTCGGGCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACg                                                                                                                                        <  1:732852/150‑1 (MQ=255)                tGGCCGAAGAAATTGGCATGCACACCGTGCTGATCCCCAAGGTGGCCTCGGGCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTgg                                                                                                                               >  1:128161‑M2/1‑142 (MQ=255)                tGGCCGAAGAAATTGGCATGCACACCGTGCTGATCCCCAAGGTGGCCTCGGGCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTgg                                                                                                                               <  2:128161‑M2/144‑3 (MQ=255)                  gCCGAAGAAATTGGCATGCACACCGTGCTGATCCCCAAGGTGGCCTCGGGCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAAcgc                                                                                                                       >  2:386547/1‑148 (MQ=255)                     gaagaaATTGGCATGCACACCGTGCTGATCCCCAAGGTGGCCTCGGGCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCaggtcgacgtgcccggcgtccaggcgcat                                                                                                                          <  2:422132‑M1/144‑30 (MQ=255)                     gaagaaATTGGCATGCACACCGTGCTGATCCCCAAGGTGGCCTCGGGCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCaggtcgacgtgcccggcgtccaggcgcat                                                                                                                          >  1:422132‑M1/1‑115 (MQ=255)                     gaagaaATTGGCATGCACACCGTGCTGATCCCCAAGGTGGCCTCGGGCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAAc                                                                                                                    >  1:895242/1‑150 (MQ=255)                     gaagaaATTGGCATGCACACCGTGCTGATCCCCAAGGTGGCCTCGGGCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAAc                                                                                                                    >  2:83486/1‑150 (MQ=255)                                 aTGCACACCGTGCTGATCCCCAAGGTGGCCTCGGGCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGcc                                                                                                        >  2:74242/1‑150 (MQ=255)                                         cGTGCTGATCCCCAAGGTGGCCTCGGGCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACg                                                                                                >  2:401408/1‑150 (MQ=255)                                           tGCTGATCCCCAAGGTGGCCTCGGGCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTc                                                                                              <  2:283569/150‑1 (MQ=255)                                                   cccAAGGTGGCCTCGGGCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGc                                                                                                                                           <  1:239387/97‑1 (MQ=255)                                                   cccAAGGTGGCCTCGGGCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGc                                                                                                                                           >  2:239387/1‑97 (MQ=255)                                                   cccAAGGTGGCCTCGGGCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGc                                                                                      <  1:143813/150‑1 (MQ=255)                                                    ccAAGGTGGCCTCGGGCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGcc                                                                                     >  2:368984/1‑150 (MQ=255)                                                     cAAGGTGGCCACGGGCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCt                                                                                    >  2:884773/1‑150 (MQ=255)                                                       aGGTGGCCTCGGGCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGCCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTg                                                                                  >  1:755763/1‑150 (MQ=255)                                                        ggTGGCCTCGGGCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACTTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGc                                                                                 <  1:564608/150‑1 (MQ=255)                                                        ggTGGCCTCGGGCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGc                                                                                 <  2:541773/150‑1 (MQ=255)                                                         gTGGCCTCGGGCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTg                                                                                                                                                     >  2:219998/1‑81 (MQ=255)                                                         gTGGCCTCGGGCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTg                                                                                                                                                     <  1:219998/81‑1 (MQ=255)                                                               tCGGGCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCACCCTg                                                                          >  1:361894/1‑150 (MQ=255)                                                                 gggCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTgcg                                                                        >  1:194238/1‑150 (MQ=255)                                                                   gCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGcgcg                                                                      >  2:493853/1‑150 (MQ=255)                                                                             gTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCCGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGAc                                                                 <  1:511609/145‑1 (MQ=255)                                                                             gTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCCGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGAc                                                                 >  2:511609/1‑145 (MQ=255)                                                                              ttCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCttt                                                           <  1:401408/150‑1 (MQ=255)                                                                               tCGGCCAGATCATGTCCGACGCGCGCTATGACCAGCTCACCAGCCTGTCGATGCGCGTGGGTGCCGGGTACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAAGTACGTCAGCAAGGCCTTGACAACCTGCGCGAAGACGGCTTTg                                                          <  2:111024/150‑1 (MQ=255)                                                                               ccGGCCAGGTCCGGTCCGAGGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCGGCGCGAAGACGGCTTTg                                                          <  2:110191/149‑1 (MQ=255)                                                                                 ggCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGc                                                        <  2:895242/150‑1 (MQ=255)                                                                                  gCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCg                                                       >  1:495592/1‑150 (MQ=255)                                                                                         ccTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGc                                                <  1:83486/150‑1 (MQ=255)                                                                                           tGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCca                                              >  2:761090/1‑150 (MQ=255)                                                                                            gTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCaggtcgacgtgcccggcgtcca                                                                                                                                 <  2:108943‑M1/66‑23 (MQ=255)                                                                                            gTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCaggtcgacgtgcccggcgtcca                                                                                                                                 >  1:108943‑M1/1‑44 (MQ=255)                                                                                               cGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCcagcag                                          <  2:361894/150‑1 (MQ=255)                                                                                               cGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCcagcag                                          >  2:859766/1‑150 (MQ=255)                                                                                                     gcgcTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCa                                    <  1:74242/150‑1 (MQ=255)                                                                                                        cTACGACCAGCTCAACAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTa                                 <  1:659997/150‑1 (MQ=255)                                                                                                         tACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTTGCGCAACTCCACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTac                                >  2:323477/1‑150 (MQ=255)                                                                                                                aGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTgg                         <  1:368984/150‑1 (MQ=255)                                                                                                                 gCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGga                        <  1:230158/150‑1 (MQ=255)                                                                                                                  cTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGgag                       <  2:495592/150‑1 (MQ=255)                                                                                                                      ccAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGGAGATgc                   <  2:194238/150‑1 (MQ=255)                                                                                                                      ccAGCCTGTCGATGCGCCTGGACGCCGGGCACGCCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGGAGATgc                   <  1:402995/150‑1 (MQ=255)                                                                                                                                gATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGGAGATGCGCTACCTggg         <  1:386547/150‑1 (MQ=255)                                                                                                                                 aTGCGCCTGGACGCCGGGCACGTCGACCTggcgcatcgacaggctggtgagctggtcgtagcgcacgtcggacaggatctggccgaacgcacacaagcccgaggccaccttggggatcagcacggtgtgcatgccaatttcttc              <  2:422132‑M2/144‑116 (MQ=255)                                                                                                                                 aTGCGCCTGGACGCCGGGCACGTCGACCTggcgcatcgacaggctggtgagctggtcgtagcgcacgtcggacaggatctggccgaacgcacacaagcccgaggccaccttggggatcagcacggtgtgcatgccaatttcttc              >  1:422132‑M2/1‑29 (MQ=255)                                                                                                                                 aTGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGGAGATGCGCTACCTgggg        >  2:539285/1‑150 (MQ=255)                                                                                                                                  tGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGGAGATGCGCTACCTGGGGc       >  1:1047275/1‑150 (MQ=255)                                                                                                                                      ccaggtcgacgtgcccggcgtccaggcgcatcgacaggctggtgagctggtcgtagcgcacgtcggacaggatctggccgaacgcacacaagcccgaggccaccttggggatcagcacggtgtgcatgccaatttcttcggcca         <  2:128161‑M1/144‑143 (MQ=255)                                                                                                                                      ccaggtcgacgtgcccggcgtccaggcgcatcgacaggctggtgagctggtcgtagcgcacgtcggacaggatctggccgaacgcacacaagcccgaggccaccttggggatcagcacggtgtgcatgccaatttcttcggcca         >  1:128161‑M1/1‑2 (MQ=255)                                                                                                                                       cTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGGAGATGCGCTACCTGGGGCAGAtt  <  1:859766/150‑1 (MQ=255)                                                                                                                                       |                                                                                                                                                      TGCACGTGGTGCGCCTGGCCGAAGAAATTGGCATGCACACCGTGCTGATCCCCAAGGTGGCCTCGGGCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGGAGATGCGCTACCTGGGGCAGATT  >  NC_002947/3988908‑3989191

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.