New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4247312 =	43 (0.990)	4 (0.100)	4/246	NT	8.4%	coding (649/1608 nt)	aruI	2‑ketoarginine decarboxylase AruI
	?	NC_002947	4247350 =	46 (1.100)					coding (611/1608 nt)	aruI	2‑ketoarginine decarboxylase AruI

GATCAACTGCCAGCCGGGTTCGACGCACAGGCTGGCGCCGGCATTGAGTGGCGCGTCTGGTGGCAGCAAGCCCTTGCCGGCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACGT  >  NC_002947/4247163‑4247458                                                                                                                                                      |                                                                                                                                                   gATCAACTGCCAGCCGGGTTCGACGCACAGGCTGGCGCCGGCATTGAGTGGCGCGTCTGGTGGCAGCAAGCCCTTGCCGGCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAAcgc                                                                                                                                                    <  1:541986/150‑1 (MQ=255)   tCAACTGCCAGCCGGGTTCGACGCACAGGCTGGCGCCGGCGTTGAGTGGCGCGTCTGGTGGCAGCAAGCCCTTGCCGGCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACgcgc                                                                                                                                                  >  2:930480/1‑150 (MQ=255)    gaacgaccgcgcccggtgcacatttcggtgcccctggacgtgctggcggcatcggtcagccgggactggagcggtgaggtggtacgccgtcccgggcgtggccagccgtgccgcgaaaccctcgagcaggctgccctgaagcttgccgcc                                                                                                                                                 <  2:826699‑M1/4‑1 (MQ=255)              ccGGGTTCGACGCACAGGCTGGCGCCGGCATTGAGTGGCGCGTCTGGTGGCAGCAAGCCCTTGCCGGCCTCGGGGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCa                                                                                                                                       >  1:921201/1‑150 (MQ=255)                                 tGGCGCCGGCATTGAGTGGCGCGTCTGGTGGCAGCAAGCCCTTGCCGGCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTggg                                                                                                                    <  1:554384/150‑1 (MQ=255)                                         acgtgctggcggcatcggtcagccgggactggagcggtgaggtggtacgccgtcccgggcgtggccagccgtgccgcgaaaccctcgagcaggctgccctgaagcttgcCGCCACCCCCGGCAATGATCATAGGCCGCTGggcggcg                                                                                                               <  2:288524‑M1/38‑1 (MQ=255)                                         acgtgctggcggcatcggtcagccgggactggagcggtgaggtggtacgccgtcccgggcgtggccagccgtgccgcgaaaccctcgagcaggctgccctgaagcttgcCGCCACCCCCGGCAATGATCATAGGCCGCTGggcggcg                                                                                                               >  1:288524‑M1/110‑147 (MQ=255)                                              gAGTGGCGCGTCTGGTGGCAGCAAGCCCTTGCCGGCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAAcgc                                                                                                                                                    <  1:152697/105‑1 (MQ=255)                                              gAGTGGCGCGTCTGGTGGCAGCAAGCCCTTGCCGGCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAAcgc                                                                                                                                                    >  2:152697/1‑105 (MQ=255)                                                gTGGCGCGTCTGGTGGCAGCAAGCCCTTGCCGGCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCa                                                                                                     <  1:930480/150‑1 (MQ=255)                                                 tGGCGCGTCTGGTGGCAGCAAGCCCTTGCCGGCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAg                                                                                                    <  1:1104859/150‑1 (MQ=255)                                                  ggCGCGTCTGGTGGCAGCAAGCCCTTGCCGGCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAgg                                                                                                   <  2:1120746/150‑1 (MQ=255)                                                            gtggCAGCAAGCCCTTGCCGGCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCAcc                                                                                                                                              >  2:305067/1‑97 (MQ=255)                                                            gtggCAGCAAGCCCTTGCCGGCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCAcc                                                                                                                                              <  1:305067/97‑1 (MQ=255)                                                                cagcaAGCCCTTGCCGGCTATGTTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAg                                                                                     <  2:342228/150‑1 (MQ=255)                                                                        ccTTGCCGGCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAg                                                                                                                             <  2:455416/102‑1 (MQ=255)                                                                        ccTTGCCGGCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAg                                                                                                                             >  1:455416/1‑102 (MQ=255)                                                                        ccTTGCCGGCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTcgc                                                                             >  1:498492/1‑150 (MQ=255)                                                                        ccTTGCCGGCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTcgc                                                                             >  2:859823/1‑150 (MQ=255)                                                                         cTTGCCGGCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGc                                                                                                         <  1:96196/121‑1 (MQ=255)                                                                         cTTGCCGGCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGc                                                                                                         >  2:96196/1‑121 (MQ=255)                                                                         cTTGCCGGCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTcgcg                                                                            >  1:787843/1‑150 (MQ=255)                                                                          ttGCCGGCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCgg                                                                           >  2:318438/1‑150 (MQ=255)                                                                               ggCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACgg                                                                      <  1:128532/150‑1 (MQ=255)                                                                               ggCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACgg                                                                      <  1:319213/150‑1 (MQ=255)                                                                                   tggtacgccgtcccgggcgtggccagccgtgccgcgaaaccctcgagcaggctgccctgaagcttgcCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGc                                                                                                 <  1:1064097‑M1/52‑1 (MQ=255)                                                                                   tggtacgccgtcccgggcgtggccagccgtgccgcgaaaccctcgagcaggctgccctgaagcttgcCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGc                                                                                                 >  2:1064097‑M1/68‑119 (MQ=255)                                                                                            aaCAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCg                                                         <  2:589425/150‑1 (MQ=255)                                                                                              cAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCggg                                                       >  1:1070844/1‑150 (MQ=255)                                                                                               agagGCGCTGCTAGCGGTGTACTTAGTTGCTGCAACTGCTCAGCCGCGTGCAACGAGCCAACCCCGGCCATGAACAGAGGACGCTGGGCGGCGGCAAGCTTCACGGCAGCCTGCTCGCGGGTTCCGCGGCACGGCTGGCCACGCCCGGGa                                                      >  2:15246/1‑150 (MQ=255)                                                                                                                     tGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTcc                                >  1:812293/1‑150 (MQ=255)                                                                                                                     tGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTcc                                >  1:371592/1‑150 (MQ=255)                                                                                                                       aGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTCTCGCGGCACGCCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAg                              <  1:232870/150‑1 (MQ=255)                                                                                                                         ttGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTc                            <  2:498492/150‑1 (MQ=255)                                                                                                                            ctgcAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCg                         >  1:826699/1‑150 (MQ=255)                                                                                                                            ctgcAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCg                         <  2:328440/150‑1 (MQ=255)                                                                                                                             ttcAACTTCTCAGCCGCGTTCAACGCGCCACCCCCGGCAATGATCATCGGCCGCTGGGCGGCGGCAAGCGTCAGGGCAGCCTGCGCGAGGGTTGCGCTGCACCGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCgg                        >  2:500296/3‑150 (MQ=255)                                                                                                                             tgcAACTGCTCAGCCGCGTGCAACGCGCCCCCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCgg                        >  2:381405/1‑150 (MQ=255)                                                                                                                             tgcAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGACCGGCTGGACACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCgg                        >  1:73756/1‑150 (MQ=255)                                                                                                                              gcAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGc                       >  1:813882/1‑150 (MQ=255)                                                                                                                              gcAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCATGAATGAGATTCAAGCTTTTCGACTAACGACGCCCTTGATTGCGTACCACCTCACCGCTCCAGTCCCGGc                       <  1:300511/150‑1 (MQ=255)                                                                                                                                aaCTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTg                     >  1:382517/1‑150 (MQ=255)                                                                                                                                   tGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGccc                                                          <  1:193914/110‑1 (MQ=255)                                                                                                                                   tGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGccc                                                          >  2:193914/1‑110 (MQ=255)                                                                                                                                      tCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAgg                                                                                                   >  1:1117328/1‑66 (MQ=255)                                                                                                                                      tCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAgg                                                                                                   <  2:1117328/66‑1 (MQ=255)                                                                                                                                      tCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGAt               >  1:919494/1‑150 (MQ=255)                                                                                                                                      tCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGAt               <  1:859823/150‑1 (MQ=255)                                                                                                                                        aGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGATCGATgc             <  2:655398/150‑1 (MQ=255)                                                                                                                                          ccGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATgccg           <  2:299192/150‑1 (MQ=255)                                                                                                                                          ccGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATgccg           >  1:450665/1‑150 (MQ=255)                                                                                                                                                gCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCa     <  2:813882/150‑1 (MQ=255)                                                                                                                                                 cAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCAc    >  1:453624/1‑150 (MQ=255)                                                                                                                                                   aCGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACGt  >  2:505840/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                   GATCAACTGCCAGCCGGGTTCGACGCACAGGCTGGCGCCGGCATTGAGTGGCGCGTCTGGTGGCAGCAAGCCCTTGCCGGCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACGT  >  NC_002947/4247163‑4247458

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.