New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4590136	40 (0.920)	4 (0.100)	4/242	NT	9.1%	coding (772/1608 nt)	mccB	methylcrotonyl‑CoA carboxylase biotin‑containing subunit beta
	?	NC_002947	= 4590151	42 (1.020)					coding (787/1608 nt)	mccB	methylcrotonyl‑CoA carboxylase biotin‑containing subunit beta

ACCATCTTCCTCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGATGAGCTGTACGGCGTGGTTCCGGCCGATGCCAAGCAACCGTTCGACGTGCGCGAGGTGATC  >  NC_002947/4589992‑4590285                                                                                                                                                 |                                                                                                                                                        aCCATCTTCCTCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATcgc‑g                                                                                                                                                   >  1:373328/1‑150 (MQ=255)      cTTCCTCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCAGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACg                                                                                                                                             >  1:307040/1‑150 (MQ=255)       ttCCTCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGCCGAACACGCCCTGGCCATCGC‑GCG‑ACGc                                                                                                                                            >  2:815647/1‑150 (MQ=255)           tCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAgtg                                                                                                                                        >  1:103555/1‑150 (MQ=255)            cGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGt                                                                                                                                       >  1:498194‑M2/1‑149 (MQ=255)                                  gccgccACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAg                                                                                                                 >  2:416477/1‑150 (MQ=255)                                    cgccACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCt                                                                                                               >  2:849250/1‑150 (MQ=255)                                      ccACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCg                                                                                                             <  2:858159/150‑1 (MQ=255)                                        aCCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGc                                                                                                           <  1:849250/150‑1 (MQ=255)                                           ggCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCAcactgcgtcgcgcgatggccagggcgtgttcgtc                                                                                                                       >  2:833167‑M1/1‑103 (MQ=255)                                           ggCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCA‑CACTGCG‑TCGC‑GCGatggccagggcgtgttcgtc                                                                                                                    >  1:833167‑M2/1‑117 (MQ=255)                                                aGTGGTGAGCGCCGAAGGCCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCa                                                                                                   <  1:844268/150‑1 (MQ=255)                                                  tggtgAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCAGCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGc                                                                                                 >  2:33578/1‑150 (MQ=255)                                                   ggtgAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCg                                                                                                >  1:105080/1‑150 (MQ=255)                                                      gAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGtt                                                                                             <  1:258795/150‑1 (MQ=255)                                                       aGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTg                                                                                            >  1:603426/1‑150 (MQ=255)                                                               aGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGt                                                                                    <  1:1124844/150‑1 (MQ=255)                                                                gACCTCGGCGGCGCGGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCACACTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTg                                                                                   <  1:527717/150‑1 (MQ=255)                                                                  ccTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGc                                                                                 >  2:171334/1‑150 (MQ=255)                                                                   cTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCa                                                                                <  1:330158/150‑1 (MQ=255)                                                                   cTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCa                                                                                >  1:174807/1‑150 (MQ=255)                                                                    tCGGCGGCGCTGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCAc                                                                               <  2:1107348/150‑1 (MQ=255)                                                                    tCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCa                                                                                         >  2:537879/1‑140 (MQ=255)                                                                    tCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCa                                                                                         <  1:537879/140‑1 (MQ=255)                                                                    tCGGCGGCGCAGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCAATAA‑GAGTTCGTTG‑CTTTCAAATTGCAACTTTCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCAc                                                                               >  1:130966/1‑150 (MQ=255)                                                                     cggcggCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCAcc                                                                              >  2:221823/1‑150 (MQ=255)                                                                          gcgcCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCttt                                                                         <  1:194566/150‑1 (MQ=255)                                                                           cgcCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTa                                                                        <  2:892872/150‑1 (MQ=255)                                                                              cGATGTGCGTTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCAcactgcgtcgcgcgatggccaggg                                                                                                                                 >  1:572642‑M1/1‑68 (MQ=255)                                                                              cGATGTGCGTTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCAcactgcgtcgcgcgatggccaggg                                                                                                                                 <  2:572642‑M1/92‑25 (MQ=255)                                                                                 tgtgCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGc                                                                  <  1:221823/150‑1 (MQ=255)                                                                                      aTTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGATg                                                             >  2:1120086/1‑150 (MQ=255)                                                                                       ttGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGATGa                                                            >  2:929167/1‑150 (MQ=255)                                                                                            gCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGATGAGCTGt                                                       <  1:666807/150‑1 (MQ=255)                                                                                               ggtgcggcgTCGCCGACCATTATGCCGACAACGACGAACACGCGCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGc                                                                            >  1:258432/4‑126 (MQ=255)                                                                                               ggtgcggcgTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGc                                                                            <  2:258432/123‑1 (MQ=255)                                                                                                 aGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCg                                                                    <  2:230076/132‑1 (MQ=255)                                                                                                 aGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCg                                                                    >  1:230076/1‑132 (MQ=255)                                                                                                                     tGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGATGAGCTGTACGGCGTGGTTCCGGCCGATGCCaa                              <  1:416477/150‑1 (MQ=255)                                                                                                                      gCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCCCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGCTGAGCTGTACGGCGTGGTTCCGGCCGATGCCAAg                             >  2:155734/1‑150 (MQ=255)                                                                                                                        cGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGATGAGCTGTACGGCGTGGTTCCGGCCGATGCCAAGCa                           >  2:1011713/1‑150 (MQ=255)                                                                                                                           cAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGATGAGCTGTACGGCGTGGTTCCGGCCGATGCCAAGCAAcc                        <  2:130966/150‑1 (MQ=255)                                                                                                                              cgacgaACACGCCCTGGCCAGCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGATGAGCTGTACGGCGTGGTTCCGGCCGATGCCAAGCAACCGtt                     <  2:103555/150‑1 (MQ=255)                                                                                                                               gacgaACACGCCCTGGCCAtcgcgcgacgcagtgtggccagggcgtgttcgtcgttgtcggcataatggtcggcgacgccgctggtgcggcaatgcacatcggcgccgccgaggtcttcggcgctcaccacttcgcc                                   >  1:833167‑M1/1‑19 (MQ=255)                                                                                                                               gacgaACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGtggccagggcgtgttcgtcgttgtcggcataatggtcggcgacgccgctggtgcggcaatgcacatcggcgccgccgaggtcttcggcgctcaccacttcgcc                                 >  2:833167‑M2/1‑34 (MQ=255)                                                                                                                                 cgaACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGATGAGCTGTACGGCGTGGTTCCGGc                                       <  1:1037090/129‑1 (MQ=255)                                                                                                                                 cgaACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGATGAGCTGTACGGCGTGGTTCCGGc                                       >  2:1037090/1‑129 (MQ=255)                                                                                                                                  gaccacGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGATGAGCTGTACGGCGTGGTTCCGGCCGATGCCAAGCAACCGTTCGAc                 <  2:307394/147‑1 (MQ=255)                                                                                                                                         cccTGGCCATCGC‑GCG‑ACGCAGTGtggccagggcgtgttcgtcgttgtcggcataatggtcggcgacgccgctggtgcggcaacgcacatcg                                                                    <  2:572642‑M2/92‑69 (MQ=255)                                                                                                                                         cccTGGCCATCGC‑GCG‑ACGCAGTGtggccagggcgtgttcgtcgttgtcggcataatggtcggcgacgccgctggtgcggcaacgcacatcg                                                                    >  1:572642‑M2/1‑24 (MQ=255)                                                                                                                                                cATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGATGAGCTGTACGGCGTGGTTCCGGCCGATGCCAAGCAACCGTTCGACGTGCGCGAGGTGAt   >  1:168746/1‑150 (MQ=255)                                                                                                                                                 acactgcgtcgcgcgatggccagggcgtgttcgtcgttgtcggcataatggtcggcgacgccgctggtgcggcaatgcacatcggcgccgccgaggtcttcggcgctcaccacttcgccggtggcggctttcaccagcggcgggccggcg    >  1:498194‑M1/1‑1 (MQ=255)                                                                                                                                                 aTCGC‑GCG‑ACGCAGTGGGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGATGAGCTGTACGGCGTGGTTCCGGCCGATGCCAAGCAACCGTTCGACGTGCGCGAGGTGATc  <  1:1042657/150‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                        ACCATCTTCCTCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGATGAGCTGTACGGCGTGGTTCCGGCCGATGCCAAGCAACCGTTCGACGTGCGCGAGGTGATC  >  NC_002947/4589992‑4590285

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.