New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4590136	40 (0.920)	4 (0.100)	4/242	NT	9.1%	coding (772/1608 nt)	mccB	methylcrotonyl‑CoA carboxylase biotin‑containing subunit beta
	?	NC_002947	= 4590151	42 (1.020)					coding (787/1608 nt)	mccB	methylcrotonyl‑CoA carboxylase biotin‑containing subunit beta

TCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGATGAGCTGTACGGCGTGGTTCCGGCCGATGCCAAGCAACCGTTCGACGTGCGCGAGGTGATCGCCCGCCTGG  >  NC_002947/4590002‑4590295                                                                                                                                                        |                                                                                                                                                 tCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAgtg                                                                                                                                                  >  1:103555/1‑150 (MQ=255)  cGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGt                                                                                                                                                 >  1:498194‑M2/1‑149 (MQ=255)                        gccgccACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAg                                                                                                                           >  2:416477/1‑150 (MQ=255)                          cgccACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCt                                                                                                                         >  2:849250/1‑150 (MQ=255)                            ccACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCg                                                                                                                       <  2:858159/150‑1 (MQ=255)                              aCCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGc                                                                                                                     <  1:849250/150‑1 (MQ=255)                                 ggCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCA‑CACTGCG‑TCGC‑GCGatggccagggcgtgttcgtc                                                                                                                              >  1:833167‑M2/1‑117 (MQ=255)                                      aGTGGTGAGCGCCGAAGGCCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCa                                                                                                             <  1:844268/150‑1 (MQ=255)                                        tggtgAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCAGCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGc                                                                                                           >  2:33578/1‑150 (MQ=255)                                         ggtgAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCg                                                                                                          >  1:105080/1‑150 (MQ=255)                                            gAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGtt                                                                                                       <  1:258795/150‑1 (MQ=255)                                             aGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTg                                                                                                      >  1:603426/1‑150 (MQ=255)                                                     aGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGt                                                                                              <  1:1124844/150‑1 (MQ=255)                                                      gACCTCGGCGGCGCGGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCACACTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTg                                                                                             <  1:527717/150‑1 (MQ=255)                                                        ccTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGc                                                                                           >  2:171334/1‑150 (MQ=255)                                                         cTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCa                                                                                          <  1:330158/150‑1 (MQ=255)                                                         cTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCa                                                                                          >  1:174807/1‑150 (MQ=255)                                                          tCGGCGGCGCTGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCAc                                                                                         <  2:1107348/150‑1 (MQ=255)                                                          tCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCa                                                                                                   >  2:537879/1‑140 (MQ=255)                                                          tCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCa                                                                                                   <  1:537879/140‑1 (MQ=255)                                                          tCGGCGGCGCAGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCAATAA‑GAGTTCGTTG‑CTTTCAAATTGCAACTTTCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCAc                                                                                         >  1:130966/1‑150 (MQ=255)                                                           cggcggCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCAcc                                                                                        >  2:221823/1‑150 (MQ=255)                                                                gcgcCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCttt                                                                                   <  1:194566/150‑1 (MQ=255)                                                                 cgcCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTa                                                                                  <  2:892872/150‑1 (MQ=255)                                                                       tgtgCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGc                                                                            <  1:221823/150‑1 (MQ=255)                                                                            aTTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGATg                                                                       >  2:1120086/1‑150 (MQ=255)                                                                             ttGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGATGa                                                                      >  2:929167/1‑150 (MQ=255)                                                                                  gCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGATGAGCTGt                                                                 <  1:666807/150‑1 (MQ=255)                                                                                     ggtgcggcgTCGCCGACCATTATGCCGACAACGACGAACACGCGCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGc                                                                                      >  1:258432/4‑126 (MQ=255)                                                                                     ggtgcggcgTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGc                                                                                      <  2:258432/123‑1 (MQ=255)                                                                                       aGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCg                                                                              >  1:230076/1‑132 (MQ=255)                                                                                       aGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCg                                                                              <  2:230076/132‑1 (MQ=255)                                                                                                           tGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGATGAGCTGTACGGCGTGGTTCCGGCCGATGCCaa                                        <  1:416477/150‑1 (MQ=255)                                                                                                            gCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCCCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGCTGAGCTGTACGGCGTGGTTCCGGCCGATGCCAAg                                       >  2:155734/1‑150 (MQ=255)                                                                                                              cGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGATGAGCTGTACGGCGTGGTTCCGGCCGATGCCAAGCa                                     >  2:1011713/1‑150 (MQ=255)                                                                                                                 cAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGATGAGCTGTACGGCGTGGTTCCGGCCGATGCCAAGCAAcc                                  <  2:130966/150‑1 (MQ=255)                                                                                                                    cgacgaACACGCCCTGGCCAGCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGATGAGCTGTACGGCGTGGTTCCGGCCGATGCCAAGCAACCGtt                               <  2:103555/150‑1 (MQ=255)                                                                                                                     gacgaACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGtggccagggcgtgttcgtcgttgtcggcataatggtcggcgacgccgctggtgcggcaatgcacatcggcgccgccgaggtcttcggcgctcaccacttcgcc                                           >  2:833167‑M2/1‑34 (MQ=255)                                                                                                                       cgaACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGATGAGCTGTACGGCGTGGTTCCGGc                                                 <  1:1037090/129‑1 (MQ=255)                                                                                                                       cgaACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGATGAGCTGTACGGCGTGGTTCCGGc                                                 >  2:1037090/1‑129 (MQ=255)                                                                                                                        gaccacGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGATGAGCTGTACGGCGTGGTTCCGGCCGATGCCAAGCAACCGTTCGAc                           <  2:307394/147‑1 (MQ=255)                                                                                                                               cccTGGCCATCGC‑GCG‑ACGCAGTGtggccagggcgtgttcgtcgttgtcggcataatggtcggcgacgccgctggtgcggcaacgcacatcg                                                                              >  1:572642‑M2/1‑24 (MQ=255)                                                                                                                               cccTGGCCATCGC‑GCG‑ACGCAGTGtggccagggcgtgttcgtcgttgtcggcataatggtcggcgacgccgctggtgcggcaacgcacatcg                                                                              <  2:572642‑M2/92‑69 (MQ=255)                                                                                                                                      cATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGATGAGCTGTACGGCGTGGTTCCGGCCGATGCCAAGCAACCGTTCGACGTGCGCGAGGTGAt             >  1:168746/1‑150 (MQ=255)                                                                                                                                       aTCGC‑GCG‑ACGCAGTGGGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGATGAGCTGTACGGCGTGGTTCCGGCCGATGCCAAGCAACCGTTCGACGTGCGCGAGGTGATc            <  1:1042657/150‑1 (MQ=255)                                                                                                                                                 ccGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGATGAGCTGTACGGCGTGGTTCCGGCCGATGCCAAGCAACCGTTCGACGTGCGCGAGGTGATCGCCCGCCt    <  2:307040/149‑1 (MQ=255)                                                                                                                                                 aCGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGTACCAGTGGCACCGCTTTATGCGGCCGATGAGCTGTACGGCGTGGTTCCGGCCGATGCCAAGCAACCGTTCGACGTGCGCGAGGTGATCGCCCGCCt    <  2:105080/150‑1 (MQ=255)                                                                                                                                                   gCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGATGAGCTGTACGGCGTGGTTCCGGCCGATGCCAAGCAACCGTTCGACGTGCGCGAGGTGATCGCCCGCCTgg  >  1:1095249/1‑150 (MQ=255)                                                                                                                                                        |                                                                                                                                                 TCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGC‑GCG‑ACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCGGCAAGCTGCAGCGGTTGGCACCAGTGGCACCGCTTTATGCGGCCGATGAGCTGTACGGCGTGGTTCCGGCCGATGCCAAGCAACCGTTCGACGTGCGCGAGGTGATCGCCCGCCTGG  >  NC_002947/4590002‑4590295

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.