| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4599018 = | 47 (1.080) | 7 (0.170) | 6/244 | NT | 12.8% | coding (837/3627 nt) | PP_4071 | membrane protein |
| ? | NC_002947 | 4599066 = | 50 (1.200) | coding (789/3627 nt) | PP_4071 | membrane protein | |||||
GCCAAGCGTCGAAGGTGTCGACAGCATCCAGCTTGAACGTGAATCCAAACAGGCTATTGCGCTTGGCGGCCGAAAGCTTGCTGTAGAATTGGTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAGGGCCGTGCGTTGCTCGACGGTACCGTGCAGTAGCGCAGGCAGGTCGACAACCAGCACCAGGCCGTTGAGGGCTCTCTGGCTTCGATTGC > NC_002947/4598870‑4599157 | ggtaccgtctggaacccaagccaaactgtggcagcatctgttggattggctgcagcgcaatcgaagccagagagccctcaacggcctggtgctggttgtcgacctgcctgcgctactgcacggtaccgtcgagcaacgcacggcccttGc > 1:702358‑M1/149‑150 (MQ=255) cAAGCGTCGAAGGTGTCGACAGCATCCAGCTTGAACGTGAATCCAAACAGGCTATTGCGCTTGGCGGCCGAAAGCTTGCTGTAGAATTGGTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGccc < 2:171418/150‑1 (MQ=255) tCGCAGGTGTCGACAGCATCCAGCTTGAACGTGAATCCAAACAGGCTATTGCGCTTGGCGGCCGAAAGCTTGCTGTAGAATTGGTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTgg < 2:128928/150‑1 (MQ=255) cGAAGGTGTCGACAGCATCCAGCTTGAACGTGAATCCAAACAGGCTATTGCGCTTGGCTGCCGAAAGCTTGCTGTAGAATTGGTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGgc < 2:522298/150‑1 (MQ=255) gcaaactgtggcagcatctgttggattggctgcagcgcaatcgaagccagagagccctcaacggcctggtgctggttgtcgacctgcctgcgctactgcacggtaccgtcgagcaacgcacggcccttGCCCAACTGGCTGCTCACCTCg < 1:880486‑M1/22‑1 (MQ=255) aTCCAGCTTGAACGTGAATCCAAACAGGCTATTGCGCTTGGCGGCCGAAAGCTTGCTGTAGAATTGGTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAg > 1:832463/1‑150 (MQ=255) aTCCAGCTTGAACGTGAATCCAAACAGGCTATTGCGCTTGGCGGCCGAAAGCTTGCTGTAGAATTGGTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAg > 2:1101673/1‑150 (MQ=255) tCCAGCTTGAACGTGAATCCAAACAGGCTATTGCTCTTGGCGGCCGAAAGCTTGCTGTAGAATTGGTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGa < 1:973184/150‑1 (MQ=255) ccAGCTTGAACGTGAATCCAAACAGGCTATTGCGCTTGGCGGCCGAAAGCTTGCTGTAGAATTGGTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGAc > 1:531471/1‑150 (MQ=255) aGCTTGAACGTGAATCCAAACAGGCTATTGCGCTTGGCGGCCGAAAGCTTGCTGTAGAATTGGTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACgt < 2:345339/150‑1 (MQ=255) gcagcatctgttggattggctgcagcgcaatcgaagccagagagccctcaacggcctggtgctggttgtcgacctgcctgcgctactgcacggtaccgtcgagcaacgcacggcccttGCCCACCTG‑CTGCTCACCTCGTAAAGACgtgt < 2:521789‑M1/32‑1 (MQ=255) gCTTGAACGTGAATCCAAACAGGCTATTGCGCTTGGCGGCCGAAAGCTTGCTGTAGAATTGGTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGccc > 2:259736/1‑122 (MQ=255) gCTTGAACGTGAATCCAAACAGGCTATTGCGCTTGGCGGCCGAAAGCTTGCTGTAGAATTGGTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGccc < 1:259736/122‑1 (MQ=255) gAACGTGAATCCAAACAGGCTATTGCGCTTGGCGGCCGAAAGCTTGCTGTAGAATTGGTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTCAAGACGTGTgcg < 2:45434/150‑1 (MQ=255) tctgttggattggctgcagcgcaatcgaagccagagagccctcaacggcctggtgctggttgtcgacctgcctgcgctactgcacggtaccgtcgagcaacgcacggcccttGCCCACCTG‑CTGCTCACCTCGTAAAGACGTGTGCgcag > 1:521789‑M1/113‑150 (MQ=255) cgggAATCCAAACAGGCTATGGCGCTTGGCGGCCGAAAGCGTGCGTTAGAATTGGTCGAAGCCGTACAGCAGATCTAACGTGCTGACCACGACATACAGCTGCAGGCGCGAGCCCAACTGGCTGCTCACATCGTAAAGGGGGGTGCgcag < 2:493578/147‑1 (MQ=255) aaTCCAAACAGGCTATTGCGCTTGGCGGCCGAAAGCTTGCTGTAGAATTGGTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACGGGTGCGCGGCAgg > 1:272111/1‑150 (MQ=255) ccAAACAGGCTATTGCGCTTGGCGGCCGAAAGCTTGCTGTAGAATTGGTCGAAGCCGTCCAGCAGATCGAAGTTGCATAATGCGACATTCGGCGGGAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTgg > 1:979778/1‑150 (MQ=25) tgcagcgcaatcgaagccagagagccctcaacggcctggtgctggttgtcgacctgcctgcgctactgcacggtaccgtcgagcaacgcacggcccttGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAgg > 2:310845‑M1/99‑150 (MQ=255) aGGCTATTGCGCTTGGCGGCCGAAAGCTTGCTGTAGAATTGGTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAgg > 1:49950/1‑150 (MQ=255) gcgaTTGCGCTTGGCGGCCGAAAGCTTGCTGTAGAATTGGTCGAAGCCGTCCAGCAGATCGAACTTGTTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAGGGc < 2:647/147‑1 (MQ=255) aTTGCGCTTGGCGGCCGAAAGCTTGCTGTAGAATTGGTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAGGGCCGt > 1:687617/1‑150 (MQ=255) tcgaagccagagagccctcaacggcctggtgctggttgtcgacctgcctgcgctactgcacggtaccgtcgagcaacgcacggcccttGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAGGGCCGTGCGtt > 2:880486‑M1/89‑150 (MQ=255) gcTTGGCGGCCGAAAGCTTGCTGTAGAATTGGTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAGGGCCGTGCGtt < 2:707209/150‑1 (MQ=255) ttGGCGGCCGAAAGCTTGCTGTAGAATTGGTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAGGGCCGTGCGTTGc > 1:7961/1‑150 (MQ=255) gaagccagagagccctcaacggcctggtgctggttgtcgacctgcctgcgctactgcacggtaccgtcgagcaacgcacggcccttGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAg < 2:537994‑M1/51‑1 (MQ=255) gaagccagagagccctcaacggcctggtgctggttgtcgacctgcctgcgctactgcacggtaccgtcgagcaacgcacggcccttGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAg > 1:537994‑M1/87‑137 (MQ=255) gcCGAAAGCTGGCTGTCGAATTGCTCCAAGCCGTCCCGCAGATCGAACTTACTAACCGCGACATACAGAGGCAAGCGCGAGCCCAAATGCCTGCTCACCTCGTAAAGACGCGGGCGCCGCGGCGGGGCAAGGGCCGTGCGTTGCTCGCCg > 2:1121861/1‑150 (MQ=255) ccGAAAGCTTGCTGTAGAATTGGTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAGGGCCGTGCGTTGCTCGACgg > 2:807923/1‑150 (MQ=255) ttGCTGTAGAATTGGTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAGGGCCGTGCGTTGCTCGACGGTACCGTGc > 2:189081/1‑150 (MQ=255) tGTAGAATTGGTCGAAGCCGGCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTCAAGAGGTGTGCGCAGCAGGTGGGCAAGGGCCGTGCGTTGCTCGACGGTACCGTGCAGTa > 1:562328/1‑150 (MQ=255) tAGAATTGGTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAGGGCCGTGCGTTGCTCGACGGTACCGTGCCGTAgc > 1:639554/1‑150 (MQ=255) tAGAATTGGTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAGGGCCGTGCGTTGCTCGACGGTACCGTGCAGTAgc > 1:1016854/1‑150 (MQ=255) aaTTGGTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAGGGCCGTGCGTTGCTCGACGGTACCGTGCAGTAGCgca < 2:666492/150‑1 (MQ=255) ttGGTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACgtgt > 2:188259/1‑93 (MQ=255) ttGGTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACgtgt < 1:188259/93‑1 (MQ=255) gtGGTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAGGGCCGTGCGTTGCTCGACGGTACCGTGCAGTAGCgcagg < 2:429901/149‑1 (MQ=255) tGGTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGAAATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAGGGCCGTGCGTTGCTCGACGGTACCGTGCAGTAGCgcaggc < 1:61970/150‑1 (MQ=255) ggTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGTAGGTGGGCAAGGGCCGTGCGTTGCTCGACGGTACCGTGCAGTAGCgcaggca < 2:49950/150‑1 (MQ=255) gTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACgt < 2:997905/88‑1 (MQ=255) gTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACgt > 1:997905/1‑88 (MQ=255) gTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAGGGCCGTGCGTTGCTCGACGGTACCGTGCAGTa > 2:1119292/1‑140 (MQ=255) gTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAGGGCCGTGCGTTGCTCGACGGTACCGTGCAGTa < 1:1119292/140‑1 (MQ=255) gTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAGGGCCGTGCGTTGCTCGACGGTACCGTGCAGTAGCgcaggcag > 1:97793/1‑150 (MQ=255) cGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAGGGCCGTGCGTTGCTCGACGGTACCGTGCAGTAGCGCAGGCAGGt < 2:7961/150‑1 (MQ=255) gTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAGGGCCGTGCGTTGCTCGACGGTACCGTGCAGTAGCGCAGGCAGGTCGACAAc < 2:531471/150‑1 (MQ=255) ccAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAGGGCCGTGCGTTGCTCGACGGTAcc > 1:107565/1‑121 (MQ=255) ccAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAGGGCCGTGCGTTGCTCGACGGTAcc < 2:107565/121‑1 (MQ=255) agcagATCGAACTTGCTCAACACGCCATCCCGCGGCAAGCGCGAGCCCAACTGGTTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAGGGCCGTGCGTTGCCCGACGGTACCGTGCAGTAGCGCAGGCAGGTCGACAACCAGc < 2:272111/150‑1 (MQ=255) cGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAGGGCCGTGCGTTGCTCGACGGTACCGTGCAGTAGCGCAGGCAGGTCGACAACCAGCACCAGGc < 2:97793/150‑1 (MQ=255) aaCACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAGGGCCGTGCGTTGCTCGACGGTACCGTGCAGTAGCGCAGGCAGGTCGACAACCAGCACCAGGCCGTTGAGGGct > 1:655896/1‑150 (MQ=255) acGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAGGGCCGTGCGTTGCTCGACGGTACCGTGCAGTAGCGCAGGCAGGTCGACAACCAGCACCAGGCCGTTGAGGGctctc > 2:293093/1‑150 (MQ=255) cATACAGCGGCAAGCGCGATCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAGGGCCGTGCGTTGCTCGACGGTACCGTGCAGTAGCGCAGGCAGGTCGACAACCAGCACCAGGCCGTTGAGGGCTCTCTGGc < 1:674879/150‑1 (MQ=255) aTACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAGGGCCGTGCGTTGCTCGACGGTACCGTGCAGTAGCGCAGGCAGGTCGACAACCAGCACCAGGCCGTTGAGGGCTCTCTGGCt > 1:887924/1‑150 (MQ=255) aCAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAGGGCCGTGCGTTGCTCGACGGTACCGTGCAGTAGCGCAGGCAGGTCGACAACCAGCACCAGGCCGTTGAGGGCTCTCTGGCTTc > 2:713291/1‑150 (MQ=255) ggCGGCAAGCGCGAGCCCAAGTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAGGGCCGTGCGTGGCTCGCCGGTACCGTGCAGTAGCGCAGGCAGGTCGACAACCAGCACCAGGCCGTTGAGGGCTCTCTGGCTTAGa < 1:1121861/149‑1 (MQ=255) gggCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAGGGCCGTGCGTTGCTCGACGGTACCGTGCAGTAGCGAAGGCAGGTCGACAACCAGCACCAGGCCGTTGAGGGCTCTCTGGCTTCGAtt < 2:562328/149‑1 (MQ=255) gCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAGGGCCGTGCGTTGCTCGACGGTACCGTGCAGTAGCGCAGGCAGGTCGACAACCAGCACCAGGCCGTTGAGGGCTCTCTGGCTTCGATTgc < 2:832463/150‑1 (MQ=255) | GCCAAGCGTCGAAGGTGTCGACAGCATCCAGCTTGAACGTGAATCCAAACAGGCTATTGCGCTTGGCGGCCGAAAGCTTGCTGTAGAATTGGTCGAAGCCGTCCAGCAGATCGAACTTGCTCAACACGACATACAGCGGCAAGCGCGAGCCCAACTGGCTGCTCACCTCGTAAAGACGTGTGCGCAGCAGGTGGGCAAGGGCCGTGCGTTGCTCGACGGTACCGTGCAGTAGCGCAGGCAGGTCGACAACCAGCACCAGGCCGTTGAGGGCTCTCTGGCTTCGATTGC > NC_002947/4598870‑4599157 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |