New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5437823 =	40 (0.920)	4 (0.100)	4/244	NT	9.7%	noncoding (123/254 nt)	PP_mr57	P24 ncRNA
	?	NC_002947	5437849 =	36 (0.870)					noncoding (97/254 nt)	PP_mr57	P24 ncRNA

AAATTCCCGACATGAAAAAAGGGAGACCACAGGGCCTCCCTTCAGGAATTGTCGTCCGTGCTCGGCACTTGTGGCGCCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTGCTCAGATAAATAGCACTTGCGCAATTTTTCACCCTGGATTGATAAT  >  NC_002947/5437675‑5437969                                                                                                                                                     |                                                                                                                                                    ttgccttttctgttcggattgctgcgaattatcaatccagggtgaaaaattgcgcaagtgctatttatctgagcaatcttcgcaatcctctgtcgcaacccgtccggtatctttatcaccagaatcactgcccggacatcagtccacgGc                                                                                                                                                    >  1:736528‑M1/149‑150 (MQ=255)                aaaaaGGGAGACCACAGGGCCTCCCTTCAGGAATTGTCGTCCGTGCTCGGCACTTGTGGCGCCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAgg                                                                                                                                    >  1:271108/1‑150 (MQ=255)                 aaaaGGGAGACCACAGGGCCTCCCTTCAGGAATTGTCGTCCGTGCTCGGCACTTGTGGCGCCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAggg                                                                                                                                   <  2:638868/150‑1 (MQ=255)                 aaaaGGGAGACCACAGGGCCTCCCTTCAGGAATTGTCGTCCGTGCTCGGCACTTGTGGCGCCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCACGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGACGcgccctaggcgg                                                                                                                                    >  1:665792/1‑143 (MQ=255)                 aaaaGGGAGACCACAGGGCCTCACTCCAAGAATTGTCGTCCGTGCTCGGCACTTGTGGCGCCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAggg                                                                                                                                   >  1:151276/1‑150 (MQ=255)                   aaGGGAGACCACAGGGCCTCCCTTCAGGAATTGTCGTCCGTGCTCGGCACTTGTGGCGCCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGgcg                                                                                                                                 <  1:582963/150‑1 (MQ=255)                      ggAGACCACAGGGCCTCCCTTCAGGAATTGTCGTCCGTGCTCGGCACTTGTGGCGCCGGCTCACCTCACAACGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGCGCGt                                                                                                                              >  2:282008/1‑150 (MQ=255)                                    cTCCCTTCAGGAATTGTCGTCCGTGCTCGGCACTTGTGGCGCCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACTGAt                                                                                                                <  1:1089778/150‑1 (MQ=255)                                    cTCCCTTCAGGAATTGTCGTCCGTGCTCGGCACTTGTGGCGCCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACTGAt                                                                                                                >  2:1089778/1‑150 (MQ=255)                                       ccTTCAGGAATTGTCGTCCGTGCTCGGCACTTGTGGCGCCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGgc                                                                                                                                  >  1:34918/1‑129 (MQ=255)                                       ccTTCAGGAATTGTCGTCCGTGCTCGGCACTTGTGGCGCCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGgc                                                                                                                                  <  2:34918/129‑1 (MQ=255)                                       ccTTCAGGAATTGTCGTCCGTGCTCGGCACTTGTGGCGCCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTc                                                                                                             >  2:82419/1‑150 (MQ=255)                                         tgcAGGAATTGTCGCCCGTGCTCGGCACTTGTGGCGCCGGCTCACTTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCg                                                                                                           <  2:352373/148‑1 (MQ=255)                                          tCATGAATTGTCCTCCGTTCTCTGCACTTGTGGCGCCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGCGCCTGCAGATCCTGTGGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCgg                                                                                                          <  2:527188/150‑1 (MQ=255)                                          tCAGGAATTGTCGTCCGTGCTCGGCACTTGTGGCGCCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCgg                                                                                                          <  1:373851/150‑1 (MQ=255)                                              aaaTTGTCGTCCGTGCTCGGCACTTGTGCCGACGACTCAGCTCCTCCCCTAATCGTGATGGAGTTTAGCCCGGGGGCCTGCAGATCCTGTTAGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAg                                                                                                      <  2:578343/149‑1 (MQ=255)                                                    tcgtcCGTGCTCGGCACTTGTGGCGCCGGCTCACCTCACACTGTCTTATGGAAGGAGAAAGATCGGGGGGAGTGCAGATCCTGATGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTc                                                                                                >  2:151415/1‑150 (MQ=255)                                                      gtcCGTGCTCGGCACTTGTGGCGCCGGCTCACCTCACCCACTCGTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTg                                                                                              <  1:851364/150‑1 (MQ=255)                                                      gtcCGTGCTCGGCACTTGTGGCGCCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACt                                                                                                                   <  2:42970/129‑1 (MQ=255)                                                      gtcCGTGCTCGGCACTTGTGGCGCCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACt                                                                                                                   >  1:42970/1‑129 (MQ=255)                                                        ccGTGCTCGGCACTTGTGGCGCCGGCTCACCTCACAACGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGt                                                                                            <  1:282008/150‑1 (MQ=255)                                                              tCGGCACTTGTGGCGCCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATaaa                                                                                      <  2:271108/150‑1 (MQ=255)                                                                   atctgagcaatcttcgcaatcctctgtcgcaacccgtccggtatctttatcaccagaatcactgcccggacatcagtccacgGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGa                                                                                                                     <  1:1080369‑M1/32‑1 (MQ=255)                                                                   atctgagcaatcttcgcaatcctctgtcgcaacccgtccggtatctttatcaccagaatcactgcccggacatcagtccacgGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGa                                                                                                                     >  2:1080369‑M1/83‑114 (MQ=255)                                                                         ggCGCCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACg                                                                           <  2:733152/150‑1 (MQ=255)                                                                          caatcttcgcaatcctctgtcgcaacccgtccggtatctttatcaccagaatcactgcccggacatcagtccacgGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGt                                                                                                                        <  1:371403‑M1/29‑1 (MQ=255)                                                                          caatcttcgcaatcctctgtcgcaacccgtccggtatctttatcaccagaatcactgcccggacatcagtccacgGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGt                                                                                                                        >  2:371403‑M1/76‑104 (MQ=255)                                                                           cgcCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACggg                                                                         <  2:139911/150‑1 (MQ=255)                                                                            gcCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGt                                                                        >  1:818649/1‑150 (MQ=255)                                                                              cGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAg                                                                                                      <  1:836803/118‑1 (MQ=255)                                                                              cGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAg                                                                                                      >  2:836803/1‑118 (MQ=255)                                                                                   cacctcacACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACa                                                                 >  2:867306/1‑150 (MQ=255)                                                                                    aatcctctgtcgcaacccgtccggtatctttatcaccagaatcactgcccggacatcagtccacgGCGAc                                                                                                                                                 <  2:446771‑M1/5‑1 (MQ=255)                                                                                    aatcctctgtcgcaacccgtccggtatctttatcaccagaatcactgcccggacatcagtccacgGCGAc                                                                                                                                                 >  1:446771‑M1/66‑70 (MQ=255)                                                                                      ctcacACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACagag                                                              >  2:19773/1‑150 (MQ=255)                                                                                                 ttctGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCCCGAC‑CGCCCGCCTAGGGGGCGTGGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGa                                                   >  1:981504/1‑150 (MQ=255)                                                                                                          gtgtgtAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTGCTCAGa                                          >  1:807127/1‑150 (MQ=255)                                                                                                                 gCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGc                                                        <  1:700574/129‑1 (MQ=255)                                                                                                                 gCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGc                                                        >  2:700574/1‑129 (MQ=255)                                                                                                                   ccGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGAGCTTGTCCGTGGACTGATGTCTGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTGCTCAGGTAAATAGCa                                 <  2:151276/150‑1 (MQ=255)                                                                                                                    cGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTGCTCAGATAAATAGCAc                                >  1:676441/1‑150 (MQ=255)                                                                                                                    cGGGGGCCTGCAGATCCTGTTGGATGGCCGCCCGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGCCAGAGGATTGCGAAGATTGCTCAGATAAATAGCAc                                <  2:594012/150‑1 (MQ=255)                                                                                                                      ggggCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTGCTCAGATAAATAGCACtt                              >  1:387913/1‑150 (MQ=255)                                                                                                                                     tGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTGCTCAGATAAATAGCACtt                              <  1:566977/135‑1 (MQ=255)                                                                                                                                     tGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTGCTCAGATAAATAGCACtt                              >  2:566977/1‑135 (MQ=255)                                                                                                                                       ttGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTGCTCAGATAAATAGCACTTGCGCAATTTTTCACCCt             <  2:807127/150‑1 (MQ=255)                                                                                                                                              gccggccgCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTGCTCAGATAAATAGCACTTGCGCAATTTTTCACCCTGGATTGa      <  1:583269/150‑1 (MQ=255)                                                                                                                                                  gccgCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTGCTCAGATAAATAGCACTTGCGCAATTTTTCACCCTGGATTGATAAt  >  1:105702/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                    AAATTCCCGACATGAAAAAAGGGAGACCACAGGGCCTCCCTTCAGGAATTGTCGTCCGTGCTCGGCACTTGTGGCGCCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGAC‑CGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTGCTCAGATAAATAGCACTTGCGCAATTTTTCACCCTGGATTGATAAT  >  NC_002947/5437675‑5437969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.