New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5437823 =	40 (0.920)	4 (0.100)	4/244	NT	9.7%	noncoding (123/254 nt)	PP_mr57	P24 ncRNA
	?	NC_002947	5437849 =	36 (0.870)					noncoding (97/254 nt)	PP_mr57	P24 ncRNA

CTCCCTTCAGGAATTGTCGTCCGTGCTCGGCACTTGTGGCGCCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTGCTCAGATAAATAGCACTTGCGCAATTTTTCACCCTGGATTGATAATTCGCAGCAATCCGAACAGAAAAGGCAA  >  NC_002947/5437710‑5437996                                                                                                                                            |                                                                                                                                                    cTCCCTTCAGGAATTGTCGTCCGTGCTCGGCACTTGTGGCGCCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGAt                                                                                                                                           >  2:1089778/1‑150 (MQ=255) cTCCCTTCAGGAATTGTCGTCCGTGCTCGGCACTTGTGGCGCCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGAt                                                                                                                                           <  1:1089778/150‑1 (MQ=255)    ccTTCAGGAATTGTCGTCCGTGCTCGGCACTTGTGGCGCCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTc                                                                                                                                        >  2:82419/1‑150 (MQ=255)      tgcAGGAATTGTCGCCCGTGCTCGGCACTTGTGGCGCCGGCTCACTTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCg                                                                                                                                      <  2:352373/148‑1 (MQ=255)       tCATGAATTGTCCTCCGTTCTCTGCACTTGTGGCGCCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGCGCCTGCAGATCCTGTGGGATGGCCGGCCGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCgg                                                                                                                                     <  2:527188/150‑1 (MQ=255)       tCAGGAATTGTCGTCCGTGCTCGGCACTTGTGGCGCCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCgg                                                                                                                                     <  1:373851/150‑1 (MQ=255)           aaaTTGTCGTCCGTGCTCGGCACTTGTGCCGACGACTCAGCTCCTCCCCTAATCGTGATGGAGTTTAGCCCGGGGGCCTGCAGATCCTGTTAGATGGCCGGCCGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAg                                                                                                                                 <  2:578343/149‑1 (MQ=255)                 tcgtcCGTGCTCGGCACTTGTGGCGCCGGCTCACCTCACACTGTCTTATGGAAGGAGAAAGATCGGGGGGAGTGCAGATCCTGATGGATGGCCGGCCGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTc                                                                                                                           >  2:151415/1‑150 (MQ=255)                   gtcCGTGCTCGGCACTTGTGGCGCCGGCTCACCTCACCCACTCGTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTg                                                                                                                         <  1:851364/150‑1 (MQ=255)                   gtcCGTGCTCGGCACTTGTGGCGCCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACt                                                                                                                                              <  2:42970/129‑1 (MQ=255)                   gtcCGTGCTCGGCACTTGTGGCGCCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACt                                                                                                                                              >  1:42970/1‑129 (MQ=255)                     ccGTGCTCGGCACTTGTGGCGCCGGCTCACCTCACAACGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGt                                                                                                                       <  1:282008/150‑1 (MQ=255)                           tCGGCACTTGTGGCGCCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATaaa                                                                                                                 <  2:271108/150‑1 (MQ=255)                                atctgagcaatcttcgcaatcctctgtcgcaacccgtccggtatctttatcaccagaatcactgcccggacatcagtccacgGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGa                                                                                                                                                <  1:1080369‑M1/32‑1 (MQ=255)                                atctgagcaatcttcgcaatcctctgtcgcaacccgtccggtatctttatcaccagaatcactgcccggacatcagtccacgGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGa                                                                                                                                                >  2:1080369‑M1/83‑114 (MQ=255)                                      ggCGCCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACg                                                                                                      <  2:733152/150‑1 (MQ=255)                                       caatcttcgcaatcctctgtcgcaacccgtccggtatctttatcaccagaatcactgcccggacatcagtccacgGCGACCGCCCGCCTAGGGCGCGTCGCCGt                                                                                                                                                   <  1:371403‑M1/29‑1 (MQ=255)                                       caatcttcgcaatcctctgtcgcaacccgtccggtatctttatcaccagaatcactgcccggacatcagtccacgGCGACCGCCCGCCTAGGGCGCGTCGCCGt                                                                                                                                                   >  2:371403‑M1/76‑104 (MQ=255)                                        cgcCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACggg                                                                                                    <  2:139911/150‑1 (MQ=255)                                         gcCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGt                                                                                                   >  1:818649/1‑150 (MQ=255)                                           cGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAg                                                                                                                                 <  1:836803/118‑1 (MQ=255)                                           cGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAg                                                                                                                                 >  2:836803/1‑118 (MQ=255)                                                cacctcacACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACa                                                                                            >  2:867306/1‑150 (MQ=255)                                                   ctcacACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACagag                                                                                         >  2:19773/1‑150 (MQ=255)                                                              ttctGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCCCGACCGCCCGCCTAGGGGGCGTGGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGa                                                                              >  1:981504/1‑150 (MQ=255)                                                                       gtgtgtAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTGCTCAGa                                                                     >  1:807127/1‑150 (MQ=255)                                                                              gCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGc                                                                                   <  1:700574/129‑1 (MQ=255)                                                                              gCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGc                                                                                   >  2:700574/1‑129 (MQ=255)                                                                                ccGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGACCGCCCGCCTAGGGAGCTTGTCCGTGGACTGATGTCTGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTGCTCAGGTAAATAGCa                                                            <  2:151276/150‑1 (MQ=255)                                                                                 cGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTGCTCAGATAAATAGCAc                                                           >  1:676441/1‑150 (MQ=255)                                                                                 cGGGGGCCTGCAGATCCTGTTGGATGGCCGCCCGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGCCAGAGGATTGCGAAGATTGCTCAGATAAATAGCAc                                                           <  2:594012/150‑1 (MQ=255)                                                                                   ggggCCTGCAGATCCTGTTGGATGGCCGGCCGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTGCTCAGATAAATAGCACtt                                                         >  1:387913/1‑150 (MQ=255)                                                                                                  tGTTGGATGGCCGGCCGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTGCTCAGATAAATAGCACtt                                                         <  1:566977/135‑1 (MQ=255)                                                                                                  tGTTGGATGGCCGGCCGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTGCTCAGATAAATAGCACtt                                                         >  2:566977/1‑135 (MQ=255)                                                                                                    ttGGATGGCCGGCCGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTGCTCAGATAAATAGCACTTGCGCAATTTTTCACCCt                                        <  2:807127/150‑1 (MQ=255)                                                                                                           gccggccgCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTGCTCAGATAAATAGCACTTGCGCAATTTTTCACCCTGGATTGa                                 <  1:583269/150‑1 (MQ=255)                                                                                                            tccacggcgacgcgccctaggcgggcggtcgcCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTGCTCAGAt                                                                    >  2:1080369‑M2/33‑114 (MQ=255)                                                                                                            tccacggcgacgcgccctaggcgggcggtcgcCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTGCTCAGAt                                                                    <  1:1080369‑M2/82‑1 (MQ=255)                                                                                                               gccgCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTGCTCAGATAAATAGCACTTGCGCAATTTTTCACCCTGGATTGATAAt                             >  1:105702/1‑150 (MQ=255)                                                                                                               acggcgacgcgccctaggcgggcggtcgcCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTg                                                                           <  1:371403‑M2/75‑1 (MQ=255)                                                                                                               acggcgacgcgccctaggcgggcggtcgcCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTg                                                                           >  2:371403‑M2/30‑104 (MQ=255)                                                                                                                     ACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGGGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTGCTCAGATAAATAGCACTTGCGCAATTTTTCACCCTGGATTAATAATTCgcag                       >  1:151415‑M1/1‑150 (MQ=255)                                                                                                                       cgcccgccTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTGCTCAGATAAATAGCACTTGCGCAATTTTTCACCCTGGATTGATAATTCgcagca                     >  1:106501/1‑150 (MQ=255)                                                                                                                          ccgccTAGGGCGCGTCGCCGTGGTCTGATGTACGGGCAGGGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTGCTCAGAGAAATAGCACTTGCGCAATTTTTCACCCTGGATTGACAATTCGCACCAATc                  >  2:731787/1‑150 (MQ=255)                                                                                                                              cgatctcgcgTCGCCGTGGACTGATGTCCGGTCAGTGATTCTGGTGATAAGCATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTGCTCAGATAAATACCACTTGCGCAAGTTTTCACCCTGGATTGATAATTCGCAGCAATCCGaa              <  2:185771/144‑1 (MQ=255)                                                                                                                                aGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTGCTCAGATAAATAGCACTTGCGCAATTTTTCACCCTGGATTGATAATTCGCAGCAATCCGAACa            >  1:387977/1‑150 (MQ=255)                                                                                                                                     gcgTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTGCTCAGATAAATAGCACTTGCGCAATTTTTCACCCTGGATTGATAATTCGCAGCAATCCGAACAGatcg       >  1:185771/1‑147 (MQ=255)                                                                                                                                       gtcgcCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGAtt                                                                                     <  2:446771‑M2/65‑1 (MQ=255)                                                                                                                                       gtcgcCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGAtt                                                                                     >  1:446771‑M2/6‑70 (MQ=255)                                                                                                                                          gcCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTGCTCAGATAAATAGCACTTGCGCAATTTTTCACCCTGGATTGATAATTCGCAGCAATCCGAACAGAAAAGGCaa  >  1:736528‑M2/3‑150 (MQ=255)                                                                                                                                            |                                                                                                                                                    CTCCCTTCAGGAATTGTCGTCCGTGCTCGGCACTTGTGGCGCCGGCTCACCTCACACCGTCTTCTGGAGGGTGTGTAGCCCGGGGGCCTGCAGATCCTGTTGGATGGCCGGCCGCGACCGCCCGCCTAGGGCGCGTCGCCGTGGACTGATGTCCGGGCAGTGATTCTGGTGATAAAGATACCGGACGGGTTGCGACAGAGGATTGCGAAGATTGCTCAGATAAATAGCACTTGCGCAATTTTTCACCCTGGATTGATAATTCGCAGCAATCCGAACAGAAAAGGCAA  >  NC_002947/5437710‑5437996

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.