New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5644175 =	33 (0.760)	3 (0.070)	3/246	NT	9.4%	coding (787/1182 nt)	yhiN	FAD/NAD(P)‑binding domain‑containing oxidoreductase
	?	NC_002947	5644213 =	26 (0.620)					coding (825/1182 nt)	yhiN	FAD/NAD(P)‑binding domain‑containing oxidoreductase

GGACTGCACCGCCAGCTGCAATGGCACCAGCTTCCGCGAAAACCTGCTGTTCACGCACCGCGGCCTGAGCGGCCCGGCAATCTTGCAGATCTCGTCGTTCTGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGTTCGAGTCGAAGCCAATGAAGCAGTAC  >  NC_002947/5644027‑5644312                                                                                                                                                     |                                                                                                                                          ctgccagctcgccagcgtttctgcgatttgcgccagttccgccggggtgtactgcttcattggcttcgactcgaaccactgctcggccagcaagttggccagcttgcgggtgaacacctcgcccagcacggtcttcagttcggcgttggc                                                                                                                                          >  2:476202‑M1/149‑150 (MQ=255)        aCCGCCAGCTGCAATGGCACCAGCTTCCGCGAAAACCTGCTGTTCACGCACCGCGGCCTGAGCGGCCCGGCAATCTTGCAGATCTCGTCGTTCTGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTcc                                                                                                                                   >  1:237744/1‑150 (MQ=255)          cGCCAGCTGCAATGGCACCAGCTTCCGCGAAAACCTGCTGTTCACGCACCGCGGCCTGAGCGGCCCGGCAATCTTGCAGATCTCGTCGTTCTGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTg                                                                                                                                 >  1:1126745/1‑150 (MQ=255)          cGCCAGCTGCAATGGCACCAGCTTCCGCGAAAACCTGCTGTTCACGCACCGCGGCCTGAGCGGCCCGGCAATCTTGCAGATCTCGTCGTCAAAAAAGGCCGGTGACACGGTCGAGATCACCCTGTTGCCCGACCGCGATGCGCTTTCCTg                                                                                                                                 >  1:11432/1‑150 (MQ=255)           gCCAGCTGCAATGGCACCAGCTTCCGCGAAAACCTGCTGTTCACGCACCGCGGCCTGAGCGGCCCGGCAATCTTGCAGATCTCGTCGTTCTGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTgg                                                                                                                                <  2:293042/150‑1 (MQ=255)                 tGCAATGGCACCAGCTTCCGCGAAAACCTGCTGTTCACGCACCGCGGCCTGAGCGGCCCGGCAATCTTGCAGATCTCGTCGTTCCGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCaa                                                                                                                          <  2:419559/150‑1 (MQ=255)                  gCAATGGCACCAGCTTCCGCGAAAACCTGCTGTTCACGCACCGCGGCCTGAGCGGCCCGGCAATCTTGCAGATCTCGTCGTTCTGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAAc                                                                                                                         >  2:187864/1‑150 (MQ=255)                   cAATGGCACCAGCTTCCGCGAAAACCTGCTGTTCACGCACCGCGGCCTGAGCGGCCCGGCAATCTTGCAGATCTCGTCGTTCTGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCTTGGCTGCAACa                                                                                                                        <  2:272340/150‑1 (MQ=255)                            cAGCTTCCGCGAAAACCTGCTGTTCACGCACCGCGGCCTGAGCGGCCCGGCAATCTTGCAGATCTCGTCGTTCTGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGc                                                                                                               >  1:502183/1‑150 (MQ=255)                                    gcgAAAACCTGCTGTTCACGTACCGCGGCCTGAGCGGCAGGGAAATCTTGCAGATCTCGTCGTTCTGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAAcgcg                                                                                                       >  2:72132/1‑150 (MQ=255)                                    gcgAAAACCTGCTGTTCACGCACCGCGGCCTGAGCGGCCCGGCAATCTTGCAGATCTCGTCGTTCTGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAAcgcg                                                                                                       >  1:464499/1‑150 (MQ=255)                                     cgAAAACCTGCTGTTCACGCACCGCGGCCTGAGCGGCCCGGCAATCTTGCAGATCTCGTCGTTCTGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACgcgc                                                                                                      <  2:464499/150‑1 (MQ=255)                                        cgccggggtgtactgcttcattggcttcgactcgaaccactgctcggccagcaagttggccagcttgcgggtgaacacctcgcccagcacggtcttcagttcggcgttgGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCaa                                                                                                   >  1:362796‑M1/110‑150 (MQ=255)                                           ccTGCTGTTCACGCACCGCGGCCTGAGCGGCCCGGCAATCTTGCAGATCTCGTCGTTCTGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGc                                                                                                >  2:134058/1‑150 (MQ=255)                                                 gTTCACGCACCGCGGCCTGAGCCGCCCGGCCATCGTGCAGATCTCTTCGTTCTGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACt                                                                                          <  2:472682/150‑1 (MQ=255)                                                       gCACCGCGGCCTGAGCGGCCCGGCAATCTTGCAGATCTCGTCGTTCTGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGAAGGCCGAACGCGCCAACGCCGAACTGAAGAc                                                                                    >  2:580404/1‑150 (MQ=255)                                                                 cTGAGCGGCCCGGCAATCTTGCAGATCTCGTCGTTCTGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTc                                                                                                                                    <  1:84697/92‑1 (MQ=255)                                                                 cTGAGCGGCCCGGCAATCTTGCAGATCTCGTCGTTCTGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTc                                                                                                                                    >  2:84697/1‑92 (MQ=255)                                                                     gCGGCCCGGCAATCTTGCAGATCTCGTCGTTCTGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAgg                                                                      <  1:842063/150‑1 (MQ=255)                                                                            ccactgctcggccagcaagttggccagcttgcgggtgaacacctcgcccagcacggtcttcagttcggcgttgGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAAcgcg                                                                                                       >  2:280848‑M1/74‑110 (MQ=255)                                                                            ccactgctcggccagcaagttggccagcttgcgggtgaacacctcgcccagcacggtcttcagttcggcgttgGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAAcgcg                                                                                                       <  1:280848‑M1/37‑1 (MQ=255)                                                                                aTCTTGCAGATCTCGTCGTTCTGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGc                                                           <  1:187864/150‑1 (MQ=255)                                                                                       aGATCTCGTCGTTCTGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTgg                                                    >  1:545692/1‑150 (MQ=255)                                                                                        gATCTCGTCGTTCTGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGc                                                   <  2:257659/150‑1 (MQ=255)                                                                                          tctcGTCGTTCTGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCa                                                 >  1:584928/1‑150 (MQ=255)                                                                                                       ggAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGa                                    >  1:1119152/1‑150 (MQ=255)                                                                                                          aGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGaa                                                                                            <  2:244802/91‑1 (MQ=255)                                                                                                          aGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGaa                                                                                            >  1:244802/1‑91 (MQ=255)                                                                                                          aGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGCCCGAACGCGCCAACGCCCAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCTCAAGCTGGCCAACTTGCTGGCCGAGCa                                 <  1:72132/150‑1 (MQ=255)                                                                                                             cGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTg                              >  1:190325/1‑150 (MQ=255)                                                                                                               gTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGt                            >  2:886547/1‑150 (MQ=255)                                                                                                                   cacGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGTTCGa                        <  2:982686/150‑1 (MQ=255)                                                                                                                    acGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGTTCGAg                       >  1:393550/1‑150 (MQ=255)                                                                                                                            gaTCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGTTCGAGTCGAAGcc               >  2:896097/1‑150 (MQ=255)                                                                                                                                   cTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGTTCGAGTCGAAGCCAATGAAg        >  1:382488/1‑150 (MQ=255)                                                                                                                                      ttGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGTTCGAGTCGAAGCCAATGAAGCAg     <  2:502183/150‑1 (MQ=255)                                                                                                                                         cccGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGTTCGAGTCGAAGCCAATGAAGCAGTac  >  2:1024272/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                          GGACTGCACCGCCAGCTGCAATGGCACCAGCTTCCGCGAAAACCTGCTGTTCACGCACCGCGGCCTGAGCGGCCCGGCAATCTTGCAGATCTCGTCGTTCTGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGTTCGAGTCGAAGCCAATGAAGCAGTAC  >  NC_002947/5644027‑5644312

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.