New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5668826	33 (0.760)	6 (0.140)	4/248	NT	16.4%	coding (771/1395 nt)	ahcY	adenosylhomocysteinase
	?	NC_002947	= 5668852	29 (0.690)					coding (797/1395 nt)	ahcY	adenosylhomocysteinase

GTGGTACCGACCACCTGCTGTCGGGCAAGCAGGCCCTGGTGATCGGCTACGGTGACGTG‑GGCAAGGGCTCGGCCCAGTCCCTGCGTCAGGAAGGCATGATCGTCAAGGTCTCCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTCATCGACGGTATCAACGACGGCACCGAAGCCAGCATCGACAAGGCCCTGCTGGGCAAGATCGACCTGATCGTGACCACCACCGGTAACGTCAATGTCTGCGACGCCAACATGCTCAAGG  >  NC_002947/5668678‑5668971                                                                                                                                                      |                                                                                                                                                  gTGGTACCGACCACCTGCTGTCGGGCAAGCATGCCCTGGTGATCGGCTACGGTGACGTG‑GGCAAGGGCTCGGCCCAGTCACCGCGTCACGTGATGAGGAGGTGCAAGGTCTCCGAAATTGACCCGATCTGCGCCATGCAGGCCGGCATgg                                                                                                                                                  >  1:407640/1‑150 (MQ=255)   ggTACCGACCACCTGCTGTCGGGCAAGCAGGCCCTGGTGATCGGCTACGGTGACGTG‑GGCAAGGGCTCGGCCCAGTCCCTGCGTCAGGAAGGCATGATCGTCAAGGTCTCCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGGAc                                                                                                                                                <  1:672992/150‑1 (MQ=255)      aCCGACCACCTGCTGTCGGGCAAGCAGGCCCTGGTGATCGGCTACGGTGACGTG‑GGCAAGGGCTCGGCCCAGTCCCTGCGTCAGGAAGGCATGATCGTCAAGGTCTCCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGGACGGc                                                                                                                                             <  1:816426/150‑1 (MQ=255)      aCCGACCACCTGCTGTCGGGCAAGCAGGCCCTGGTGATCGGCTACGGTGACGTG‑GGCAAGGGCTCGGCCCAGTCCCTGCGTCAGGAAGGCATGATCGTCAAGGTCTCCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGGACGGc                                                                                                                                             <  2:76131/150‑1 (MQ=255)            caccTGCTGTCGGGCAAGCCGGCACCGGTGTTGGATTATGG‑GATCTGCGACAGGGGCTCGGCCCAGTCCCTGCGTCAGGAAGGCATGATCGTCAAGGTCTCCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGGACGGCTTCGAg                                                                                                                                       <  2:851556/150‑1 (MQ=255)             accTGCTGTCGGGCAAGCAGGCCCTGGTGATCGGCTACGGTGACGTG‑GGCAAGGGCTCGGCCCAGTCCCTGCGTCAGGAAGGCATGATCGTCAAGGTCTCCGAAATTGACTCGATCTGCGCCATGCAGGCCTGCATGGACGGCTTCGAGc                                                                                                                                      >  1:851556/1‑150 (MQ=255)                       gggCAAGCAGGCCCTGGTGATCGGCTACGTTGACGTG‑GGCAAGGGCTCGGCCCAGTCCCTGCGTCAGGAAGGCATGATCGTCAAGGTCTCCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGGACGGCTTCGAGCTGGTCTCGcc                                                                                                                            <  2:279172/150‑1 (MQ=255)                         gCAAGCAGGCCCTGGTGCTCGGCTACGGTGACGTG‑GGCAAGGGCTCGGCCCAGTCCCTGCGTCAGGAAGGCATGATCGTCAAGGTCTCCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGGACGGCTTCGAGCTGGTCTCGCCGt                                                                                                                          >  1:262799/1‑150 (MQ=255)                         gCAAGCAGGCCCTGGTGATCGGCTACGGTGACGTG‑GGCAAGGGCTCGGCCCAGTCCCTGCGTCAGGAAGGCATGATCGTCAAGGTCTCCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGGACGGCTTCGAGCTGGTCTCGCCGt                                                                                                                          >  2:915570/1‑150 (MQ=255)                                  cccTGGGGATCGGCCACGGTGACGTG‑GGCGAGGGCTCGGCCCAATCCCTGCGTCAAGAAGGCATTATCGTGAAGGTGTCCGAAATTGACCCGATCTGCGCCACGCAGGCCTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTCATCGACg                                                                                                                 <  2:262799/150‑1 (MQ=255)                                     tGGTGATCGGCTACGGTGACGTG‑GGCAAGGGCTCGGCCCAGTCCCTGCGTCAGGAAGGCATGATCGTCAAGGTCTCCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTCATCGACGGTa                                                                                                              >  1:817742/1‑150 (MQ=255)                                          aTCGGCTACGGTGACGTG‑GGCAAGGGCTCGGCCCAGTCCCTGCGTCAGGAAGGCATGATCGTCAAGGTCTCCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGGACGGCTTCGAg                                                                                                                                       >  2:753461/1‑120 (MQ=255)                                          aTCGGCTACGGTGACGTG‑GGCAAGGGCTCGGCCCAGTCCCTGCGTCAGGAAGGCATGATCGTCAAGGTCTCCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGGACGGCTTCGAg                                                                                                                                       <  1:753461/120‑1 (MQ=255)                                                      gACGTG‑GGCAAGGGCTCGGCCCAGTCCCTGCGTCAGGAAGGCATGATCGTCAAGGTCTCCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTCATCGACGGTATCAACGACGGCACCGaa                                                                                             <  2:407640/150‑1 (MQ=255)                                                               cAAGGGCTCGGCCCAGTCCCTGCGTCAGGAAGGCATGATCGTCAAGGTCTCCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGaacggcgagaccagctcgaagccgtccatgccggc                                                                                                                >  2:529450‑M1/1‑88 (MQ=255)                                                               cAAGGGCTCGGCCCAGTCCCTGCGTCAGGAAGGCATGATCGTCAAGGTCTCCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGaacggcgagaccagctcgaagccgtccatgcaggc                                                                                                                <  1:529450‑M1/123‑36 (MQ=255)                                                                   ggCTCGGCCCAGTCCCTGCGTCAGGAAGGCATGATCGTCAAGGTCTCCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTCATCGACGGTATCAACGACGGCACCGAAGCCAGCATCGAc                                                                                 >  1:894878/1‑150 (MQ=255)                                                                    gCTCGGCCCAGTCCCTGCGTCAGGAAGGCATGATCGTCAAGGTCTCCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTcat                                                                                                                      <  1:726179‑M2/112‑4 (MQ=255)                                                                    gCTCGGCCCAGTCCCTGCGTCAGGAAGGCATGATCGTCAAGGTCTCCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTcat                                                                                                                      >  2:726179‑M2/1‑109 (MQ=255)                                                                    gCTCGGCCCAGTCCCTGCGACAGGAAGGCATGATCGTCAAGGTCGCCGAAATTACAGCGAGCTGCTCCATGCAGGCCTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTCATCGACGGTATCAACGACGGCCCCGAAGCCAGCATCGACa                                                                                >  2:317898/1‑150 (MQ=255)                                                                           ccAGTCCCTGCGTCAGGAAGGCATGATCGTCAAGGTCTCCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTCATCGACGGTATCAACGACGGCACCGAAGCCAGCATCGACAAGGCCct                                                                         >  2:442857/1‑150 (MQ=255)                                                                            cAGTCCCTGCGTCAGGAAGGCATGATCGTCAAGGTCTCCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTCATCGACGGTATCAACGACGGCACCGAAGCCAGCATc                                                                                    <  1:1085322/138‑1 (MQ=255)                                                                            cAGTCCCTGCGTCAGGAAGGCATGATCGTCAAGGTCTCCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTCATCGACGGTATCAACGACGGCACCGAAGCCAGCATc                                                                                    >  2:1085322/1‑138 (MQ=255)                                                                                cccGGCGTCAGGAAGGCATGATCGTCAAGGTCTCCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTCATCGACGGTATCAACGACGGCACCGAAGCCAGCATCGACAAGGCCCTGCTgg                                                                    <  1:414192/150‑1 (MQ=255)                                                                                       tCAGGAAGGCATGATCGTCAAGGTCTCCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGaacggcgagaccagctcgaagccgtccatgcag                                                                                                                  <  2:790694‑M1/97‑34 (MQ=255)                                                                                       tCAGGAAGGCATGATCGTCAAGGTCTCCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGaacggcgagaccagctcgaagccgtccatgcag                                                                                                                  <  2:235939‑M1/97‑34 (MQ=255)                                                                                       tCAGGAAGGCATGATCGTCAAGGTCTCCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGaacggcgagaccagctcgaagccgtccatgcag                                                                                                                  >  1:235939‑M1/1‑64 (MQ=255)                                                                                       tCAGGAAGGCATGATCGTCAAGGTCTCCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGaacggcgagaccagctcgaagccgtccatgcag                                                                                                                  >  1:790694‑M1/1‑64 (MQ=255)                                                                                           gAAGGCATGATCGTCAAGGTCTCCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTCATCGACGGTATCAACGACGGCACCGACGCCAGCATCGACAAGGCCCTGCTGGGCAAGATCGAc                                                         <  1:196806/150‑1 (MQ=255)                                                                                            aaGGCATGATCGTCAAGGTCTCCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTCATCGACGGTATCAACGACGGCACCGAAGCCAGCATCGACAAGGCCCTGCTGGGCAAGATCGAcc                                                        >  2:286977/1‑150 (MQ=255)                                                                                                      cGTCAAGGTCTCCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTCATCGACGGTATCAACGACGGCACCGAAGCCAGCATCGACAAGGCCCTGCTGGGCAAGATCGACCTGATCGTGac                                              <  1:133021/150‑1 (MQ=255)                                                                                                            ggTCTCCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTCATCGACGGTATCAACGACGGCACCGAAGCCAGCATCGACAAGGCCCTGCTGGGCAAGATCGACCTGATCGTGaccaccac                                        <  1:1103931/150‑1 (MQ=255)                                                                                                                tcCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTCATCGACGGTATCAACGACGGCACCGAAGCCAGCATCGACAAGGCCCTGCTGGGCAAGATCGACCTGATCGTg                                                <  1:924434/138‑1 (MQ=255)                                                                                                                tcCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTCATCGACGGTATCAACGACGGCACCGAAGCCAGCATCGACAAGGCCCTGCTGGGCAAGATCGACCTGATCGTg                                                >  2:924434/1‑138 (MQ=255)                                                                                                                tcCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTCATCGACGGTATCAACGACGGCACCGAAGCCAGCATCGACAAGGCCCTGCTGGGCAAGATCGACCTGATCGTGACCACCACCGGt                                    >  2:681102/1‑150 (MQ=255)                                                                                                                     aaTTGACCCGATCTGCGCCATGCAGGCCTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTCATCGACGGTATCAACGACGGCACCGAAGCCAGCATCGACAAGGCCCTGCTGGGCAAGATCGACCTGATCGTGACCACCACCGGTAACGt                               <  1:442857/150‑1 (MQ=255)                                                                                                                         gACCCGATCTGCGCCATGCAGGCCTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTCATCGACGGTATCAACGACGGCACCGAAGCCAGCATCGACAAGGCCCTGCTGGGCAAGATCGACCTGATCGTGACCACCACCGGTAACGTCAAt                           <  1:286977/150‑1 (MQ=255)                                                                                                                           cccGATCTGCGCCATGCAGGCCTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTCATCGACGGTATCAACGACGGCACCGAAGCCAGCATCGACAAGGCCCTGCTgg                                                                    <  2:953029/107‑1 (MQ=255)                                                                                                                           cccGATCTGCGCCATGCAGGCCTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTCATCGACGGTATCAACGACGGCACCGAAGCCAGCATCGACAAGGCCCTGCTgg                                                                    >  1:953029/1‑107 (MQ=255)                                                                                                                            ccGATCTGCGCCATGCAGGCCTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTCATCGACGGTATCAACGACGGCACCGAAGCCAGCATCGACAAGGCCCTGCTGGGCAAGATCGACCTGATCGTGACCACCACCGGTAACGTCAATGTc                        >  1:220477/1‑150 (MQ=255)                                                                                                                                    gtccATGCAGGCCTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTCATCGACGGTATCAACGACGGCACCGAAGCCAGCATCGACAAGGCCCTGCTGGGCAAGATCGACCTGATCGTGACCACCACCGGTAACGTCAATGTCTGCGACGc                >  1:91369/3‑150 (MQ=255)                                                                                                                                           cAGGCCTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTCATCGACGGTATCAACGACGGCACCGAAGCCAGCATCGACAAGGCCCTGCTGGGCAAGATCGACCTGATCGTGACCACCACCGGTAACGTCAATGTCTGCGACGCCAACATg         >  1:395810/1‑150 (MQ=255)                                                                                                                                              gCCTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTcatgcaggcctgcatggcgcagatcgggtcaatttcggagaccttgacgatcatgccttcctgacgcagggactgggccgagcccttg                                 <  1:529450‑M2/123‑89 (MQ=255)                                                                                                                                              gCCGGCATGGACGGCTTCGAGCTGGTCTCGCCGTTcatgcaggcctgcatggcgcagatcgggtcaatttcggagaccttgacgatcatgccttcctgacgcagggactgggccgagcccttg                                 >  2:529450‑M2/1‑35 (MQ=255)                                                                                                                                                cTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTcatgcaggcctgcatggcgcagatcgggtcaatttcggagaccttgacgatcatgccttcctga                                                         <  2:235939‑M2/97‑65 (MQ=255)                                                                                                                                                cTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTcatgcaggcctgcatggcgcagatcgggtcaatttcggagaccttgacgatcatgccttcctga                                                         >  1:790694‑M2/1‑33 (MQ=255)                                                                                                                                                cTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTcatgcaggcctgcatggcgcagatcgggtcaatttcggagaccttgacgatcatgccttcctga                                                         <  2:790694‑M2/97‑65 (MQ=255)                                                                                                                                                cTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTcatgcaggcctgcatggcgcagatcgggtcaatttcggagaccttgacgatcatgccttcctga                                                         >  1:235939‑M2/1‑33 (MQ=255)                                                                                                                                                 tGCATGGACGGCTTCGAGCTGGTCTCGCCGTTCATCGACGGTATCAACGACGGCACCGAAGCCAGCATCGACAAGGCCCTGCTGGGCAAGATCGACCTGATCGTGACCACCACCGGTAACGTCAATGTCTGCGACGCCAACATGCTCAAg   <  1:1072953/150‑1 (MQ=255)                                                                                                                                                  gCATGGACGGCTTCGAGCTGGTCTCGCCGTTCATCGACGGTATCAACGACGGCACCGAAGCCAGCATCGACAAGGCCCTGCTGGGCAAGATCGACCTGATCGTGACCACCACCGGTAACGTCAATGTCTGCGACGCCAACATGCTCAAgg  <  2:395810/150‑1 (MQ=255)                                                                                                                                                    aTGaacggcgagaccagctcgaagccgtccatgcaggcctgcatggcgcagatcgggtcaatttcggagaccttgacgatcatgccttcctgacgcagggactgggccgagc                                      >  2:726179‑M1/1‑3 (MQ=255)                                                                                                                                                    aTGaacggcgagaccagctcgaagccgtccatgcaggcctgcatggcgcagatcgggtcaatttcggagaccttgacgatcatgccttcctgacgcagggactgggccgagc                                      <  1:726179‑M1/112‑110 (MQ=255)                                                                                                                                                      |                                                                                                                                                  GTGGTACCGACCACCTGCTGTCGGGCAAGCAGGCCCTGGTGATCGGCTACGGTGACGTG‑GGCAAGGGCTCGGCCCAGTCCCTGCGTCAGGAAGGCATGATCGTCAAGGTCTCCGAAATTGACCCGATCTGCGCCATGCAGGCCTGCATGGACGGCTTCGAGCTGGTCTCGCCGTTCATCGACGGTATCAACGACGGCACCGAAGCCAGCATCGACAAGGCCCTGCTGGGCAAGATCGACCTGATCGTGACCACCACCGGTAACGTCAATGTCTGCGACGCCAACATGCTCAAGG  >  NC_002947/5668678‑5668971

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.