New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	941673 =	39 (0.900)	7 (0.170)	5/238	NT	15.8%	coding (3952/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	941708 =	38 (0.940)					coding (3917/18933 nt)	PP_0806	surface adhesion protein

CGAATTGCAGTGCCGAGGAAGCATTGCCGCTTGCGTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGGTGTGATATCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGG  >  NC_002947/941568‑941855                                                                                                                                             |                                                                                                                                                    tatcacaccgcccgaggcggtcaccgacatcctggtcggcccaggtggcacggccctgagtggtcgcggcgagccgggtgccactgtcgacgtgcgtgatgccaatggcaccgtgatcggcacgggtgtggtcggtgccgTtggcaccga                                                                                                                                            <  2:1021235‑M2/10‑5 (MQ=255)   tcacaccgcccgaggcggtcaccgacatcctggtcggcccaggtggcacggccctgagtggtcgcggcgagccgggtgccactgtcgacgtgcgtgatgccaatggcaccgtgatcggcacgggtgtggtcggtgccgttggcaccgac                                                                                                                                           <  2:552522‑M2/11‑6 (MQ=255)   tcacaccgcccgaggcggtcaccgacatcctggtcggcccaggtggcacggccctgagtggtcgcggcgagccgggtgccactgtcgacgtgcgtgatgccaatggcaccgtgatcggcacgggtgtggtcggtgccgttggcaccgac                                                                                                                                           >  1:552522‑M2/139‑144 (MQ=255)    aTTGCAGTGCCGAGGAAGCATTGCCGCTCGCGTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATcacgca                                                                                                                                         <  2:1213/150‑1 (MQ=255)     ttGCAGTGCCGAGGAAGCATTGCCGCTTGCGTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACAAGAGACGGTCACGGGGCCACTGGCATcacgcac                                                                                                                                        >  1:244378/1‑150 (MQ=18)       accgcccgaggcggtcaccgacatcctggtcggcccaggtggcacggccctgagtggtcgcggcgagccgggtgccactgtcgacgtgcgtgatgccaaTGGCACCGACCACACCCGTGCCGATCACGGTGCCAt                                                                                                                                                     >  2:237171‑M1/100‑135 (MQ=255)       accgcccgaggcggtcaccgacatcctggtcggcccaggtggcacggccctgagtggtcgcggcgagccgggtgccactgtcgacgtgcgtgatgccaaTGGCACCGACCACACCCGTGCCGATCACGGTGCCAt                                                                                                                                                     <  1:237171‑M1/36‑1 (MQ=255)        cAGTGCCGAGGAAGCATTGCCGCTTGCGTCGATCTGCCTTTTGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTc                                                                                                                                     <  2:820816/150‑1 (MQ=21)          gTGCCGAGGAAGCATTGCCGCTTGCGTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGa                                                                                                                                   <  1:592359/150‑1 (MQ=255)               gAGGAAGCATTGCCGCTTGCGTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGGGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTg                                                                                                                              <  2:434508/150‑1 (MQ=255)                   aaGCATTGCCGCTTGCGTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATAACGCACGTCGACAGTGGCAc                                                                                                                          <  1:933696/150‑1 (MQ=255)                      caccgacatcctggtcggcccaggtggcacggccctgagtggtcgcggcgagccgggtgccactgtcgacgtgcgtgatgccaaTGGCACCGACCACACCCGTGCCGATCACGGTGCCAtt                                                                                                                                                    >  2:888855‑M1/85‑121 (MQ=255)                      caccgacatcctggtcggcccaggtggcacggccctgagtggtcgcggcgagccgggtgccactgtcgacgtgcgtgatgccaaTGGCACCGACCACACCCGTGCCGATCACGGTGCCAtt                                                                                                                                                    <  1:888855‑M1/37‑1 (MQ=255)                                 gCGTCGGTCTGCACCAGGCTCAATAGTGCGACCGGCTGAGCGGCCTGGGCGGTATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCTCCCGGCTCGCCGCGa                                                                                                            <  2:68229/150‑1 (MQ=18)                                   gTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGAcc                                                                                                          >  2:1023943/1‑150 (MQ=255)                                   gTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGAcc                                                                                                          >  1:1075632/1‑150 (MQ=255)                                             aCCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGcc                                                                                                >  2:438632/1‑150 (MQ=255)                                             aCCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGATCGCCGCGACCACTCAGGGcc                                                                                                >  1:848571/1‑150 (MQ=255)                                              ccAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGACATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCg                                                                                               >  2:409990/1‑150 (MQ=255)                                               cAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGt                                                                                              <  2:1075632/150‑1 (MQ=255)                                               cAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGt                                                                                              <  2:408786/150‑1 (MQ=255)                                                    tCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCAc                                                                                                                          >  2:14330/1‑117 (MQ=255)                                                    tCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCAc                                                                                                                          <  1:14330/117‑1 (MQ=255)                                                    tCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCAc                                                                                         >  1:275975/1‑150 (MQ=255)                                                    tCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCAc                                                                                         >  1:111873/1‑150 (MQ=255)                                                      aaTTGTTCGCCCGGCTGAGCGGCCGGGGTGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCt                                                                                       >  1:469215/1‑150 (MQ=255)                                                      aaTTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTcgccgc                                                                                                              <  2:784327/127‑1 (MQ=255)                                                      aaTTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTcgccgc                                                                                                              >  1:784327/1‑127 (MQ=255)                                                              gCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGAc                                                                               >  2:31741/1‑150 (MQ=255)                                                               cccGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGAcc                                                                              >  2:65861/1‑150 (MQ=255)                                                                        gCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCg                                                                     <  1:18795/150‑1 (MQ=255)                                                                        gCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGAACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCg                                                                     <  1:18788/150‑1 (MQ=255)                                                                          ggCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGt                                                                   <  1:1090259/150‑1 (MQ=255)                                                                                 gCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGcc                                                            >  2:920191/1‑150 (MQ=255)                                                                                      atcgatcAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCggg                                                       >  1:236841/1‑150 (MQ=255)                                                                                          atcAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGgt                                                   <  1:66279/150‑1 (MQ=255)                                                                                           tcAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGgtg                                                  >  1:159867/1‑150 (MQ=255)                                                                                               gtcggtgccaaCGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGGTGTGa                                               <  2:552522‑M1/138‑1 (MQ=255)                                                                                               gtcggtgccaaCGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGGTGTGa                                               >  1:552522‑M1/12‑149 (MQ=255)                                                                                                tcggtgccaaCGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGGTGTGata                                             <  2:1021235‑M1/140‑1 (MQ=255)                                                                                                      ccGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGGTGTGATATCCggg                                       <  2:950110/150‑1 (MQ=255)                                                                                                      ccGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGGTGTGATATCCggg                                       >  1:751366/1‑150 (MQ=255)                                                                                                        aatggcaccgtgatcggcacgggtgtggtcggtgccaTTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTg                                                                  >  2:888855‑M2/38‑121 (MQ=255)                                                                                                        aatggcaccgtgatcggcacgggtgtggtcggtgccaTTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTg                                                                  <  1:888855‑M2/84‑1 (MQ=255)                                                                                                         atggcaccgtgatcggcacgggtgtggtcggtgccaTTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGgt                                                   >  2:237171‑M2/37‑135 (MQ=255)                                                                                                         atggcaccgtgatcggcacgggtgtggtcggtgccaTTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGgt                                                   <  1:237171‑M2/99‑1 (MQ=255)                                                                                                           GGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGGTGTGATATCCGGGGCtgt                                  >  1:409990‑M1/1‑150 (MQ=255)                                                                                                              ACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGGTGTGATATCCGGGGCTGTGaa                               <  2:801740‑M1/150‑1 (MQ=255)                                                                                                                     acacCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGGTGTGATATCCGGGGCTGTGAACTCCAGc                        <  2:111873/150‑1 (MQ=255)                                                                                                                         ccGTGCCGATCGCGGTGCCATTGGCATCACGCGCGTCGACAGTGGCGCCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGTCGACCAGGATGTCGGTGACCGCCTCGGGCGGTGTGATATCCGGGGCTGTGAACTCCAGCGGTa                    <  2:74665/150‑1 (MQ=255)                                                                                                                            tGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGGTGTGATATCCGGGGCTGTGAACTCCAGCGGTATCg                 <  2:244378/150‑1 (MQ=255)                                                                                                                              ccGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGGTGTGATATCCGGGGCTGTGAACTCCAGCGGTATCGaa               <  1:1023943/150‑1 (MQ=255)                                                                                                                               cGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGGTGTGATATCCGGGGCTGTGAACTCCAGCGGTATCGAAc              <  2:469215/150‑1 (MQ=255)                                                                                                                               cGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGGTGTGATATCCGGGGCTGTGAACTCCAGCGGTATCGAAc              <  1:1021235/150‑1 (MQ=255)                                                                                                                                gATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGGTGTGATATCCGGGGCTGTGAACTCCAGCGGTATCGAACt             <  1:801740/150‑1 (MQ=255)                                                                                                                                    aCGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGGtgtg                                                >  1:832321/1‑111 (MQ=255)                                                                                                                                    aCGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGGtgtg                                                <  2:832321/111‑1 (MQ=255)                                                                                                                                       gtgccaTTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGGTGTGATATCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCcg      >  2:857556‑M2/7‑150 (MQ=255)                                                                                                                                           caTTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCGGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGGTGTGATATCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCcggcgg  >  1:932398‑M2/3‑150 (MQ=255)                                                                                                                                           caTTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGGTGTGATATCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCcggcgg  >  2:167806‑M2/3‑150 (MQ=255)                                                                                                                                             |                                                                                                                                                    CGAATTGCAGTGCCGAGGAAGCATTGCCGCTTGCGTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGGTGTGATATCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGG  >  NC_002947/941568‑941855

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.