New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3793872	50 (1.150)	4 (0.100)	3/244	NT	7.9%	coding (694/1191 nt)	PP_3355	beta‑ketothiolase
	?	NC_002947	= 3793905	45 (1.080)					coding (661/1191 nt)	PP_3355	beta‑ketothiolase

GATGAGTGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTC‑GGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGG  >  NC_002947/3793758‑3794053                                                                                                                                                     |                                                                                                                                                     ggtgaGTGCAACCGGAGTCGCGAGTGACCCAGGCTGCCGCCGCGACATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTC‑GGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCct                                                                                                                                                    >  2:789784‑M2/3‑148 (MQ=255)     aGTGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTC‑GGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCt                                                                                                                                                <  2:232862/150‑1 (MQ=255)       tGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTC‑GGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGGTGTCATGGCTgg                                                                                                                                              >  2:733010/1‑149 (MQ=255)            tCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCACCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTC‑GGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACctca                                                                                                                                         <  2:599730/150‑1 (MQ=255)              ggAGTAGCGCGTGACCTAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTC‑GGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACctcact                                                                                                                                       <  2:567805/150‑1 (MQ=255)                  tAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTC‑GGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTcacg                                                                                                                                   >  1:425326/1‑150 (MQ=255)                       cgTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTC‑GGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTcacgccacc                                                                                                                              >  1:389918/1‑149 (MQ=255)                            ccAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTC‑GGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGgca                                                                                                                         >  1:159920/1‑150 (MQ=255)                              aaGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTC‑GGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGgcaat                                                                                                                       >  2:342737/1‑150 (MQ=255)                              aaGGCGGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTC‑GGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGTGgcaat                                                                                                                       <  1:167222/150‑1 (MQ=255)                                 gCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAACCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTC‑GGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGgcattgca                                                                                                                    <  1:1086337/150‑1 (MQ=255)                                        ccgcGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTC‑GGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCcgc                                                                                                             >  1:1074756/1‑150 (MQ=255)                                          gcgcCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTC‑GGGCCAGTGCGGCCGCGTCTGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGt                                                                                                           <  1:717918/150‑1 (MQ=255)                                           cgcCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTC‑GGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGtg                                                                                                          <  1:206930/150‑1 (MQ=255)                                                tCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTC‑GGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGtggctgg                                                                                                     >  1:207048/1‑150 (MQ=255)                                                    ccaccGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTC‑GGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGc                                                                                                 >  1:499381/1‑150 (MQ=255)                                                        cgcgCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGAACGGCAAGTAATA‑GTGCCAGTTCGGCCGGGTCGTGAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTc                                                                                             >  1:861621/1‑150 (MQ=255)                                                             aaCTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTC‑GGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCGCTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTATCt                                                                                        >  2:379866/1‑150 (MQ=255)                                                             aaCTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTC‑GGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCt                                                                                        >  2:596879/1‑150 (MQ=255)                                                                tGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGGGCAAT‑CGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCa                                                                                     <  1:68351/150‑1 (MQ=255)                                                                tGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTC‑GGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCa                                                                                     <  1:645887/150‑1 (MQ=255)                                                                  ttGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTC‑GGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGt                                                                                   >  2:148353/1‑150 (MQ=255)                                                                    gCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTC‑GGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGc                                                                                 >  1:484804/1‑150 (MQ=255)                                                                        gCCGTCTGCACGTCATCGGCGTGCACCGGGCGCAGTC‑GGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTgt                                                                             <  2:615873/150‑2 (MQ=255)                                                                                     cACCGGCGTGCACCGGGCGCAGTC‑GGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTCCCTCCAGTGCCTGCGCGGTGACGCTGa                                                                <  1:254918/150‑1 (MQ=255)                                                                                        cGGCGTGCACCGGGCGCAGTC‑GGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGcc                                                                                                >  2:244200/1‑115 (MQ=255)                                                                                        cGGCGTGCACCGGGCGCAGTC‑GGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGcc                                                                                                <  1:244200/115‑1 (MQ=255)                                                                                               cACCGGGCGCAGTC‑GGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCtc                                                      <  1:733010/150‑1 (MQ=255)                                                                                                     gcgcAGTC‑GGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTc                                                                                             >  2:475611/1‑105 (MQ=255)                                                                                                     gcgcAGTC‑GGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTc                                                                                             <  1:475611/105‑1 (MQ=255)                                                                                                     gcgcAGTC‑GGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGaa                                                <  2:484804/150‑1 (MQ=255)                                                                                                      cgcAGTC‑GGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAAc                                               <  2:1016288/150‑1 (MQ=255)                                                                                                                 ccAGTGCGGCCGCGTCGGTAGGCCGTGGGTGACTGTCctggcccgactgcgcccggtgcacgccggtggcgtgcagacggctggcaacagttgcgcggtggtcgatggcgcggcggcagccttggtcacgcgctactccgattgcactca                                     <  2:788322‑M2/150‑114 (MQ=255)                                                                                                                 ccAGTGCGGCCGCGTCGGTAGGCCGTGGGTGAATGTCctggcccgactgcgcccggtgcacgccggtggcgtgcagacggctggcaacagttgcgcggtggtcgatggcgcggcggcagccttggacacgcgctactacgattgcactca                                     <  2:785402‑M2/150‑114 (MQ=255)                                                                                                                  cAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCctggcccgactgcgcccggtgcacgccggtggcgtgcagacggctggcaacagttgcgcggtggtcgatggcgcggcggcagccttggtcacgc                                                        >  2:375859‑M2/1‑36 (MQ=255)                                                                                                                  cAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCctggcccgactgcgcccggtgcacgccggtggcgtgcagacggctggcaacagttgcgcggtggtcgatggcgcggcggcagccttggtcacgc                                                        <  1:375859‑M2/130‑95 (MQ=255)                                                                                                                  cAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTCTTTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCAc                                    <  1:789787/150‑1 (MQ=255)                                                                                                                      gCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCCCCTgg                                <  2:159920/150‑1 (MQ=255)                                                                                                                               tCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAgg                       <  1:596879/150‑1 (MQ=255)                                                                                                                                 ggTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTAc                                                                                          >  1:1096845/1‑81 (MQ=255)                                                                                                                                 ggTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTAc                                                                                          <  2:1096845/81‑1 (MQ=255)                                                                                                                                 ggTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAGGGc                     <  2:207048/150‑1 (MQ=255)                                                                                                                                  gTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTgc                                                                             <  2:378804/93‑1 (MQ=255)                                                                                                                                  gTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTgc                                                                             >  1:378804/1‑93 (MQ=255)                                                                                                                                  gTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAGGGcc                    >  1:429892/1‑150 (MQ=255)                                                                                                                                    aGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAGGGCCCg                  <  1:274604/150‑1 (MQ=255)                                                                                                                                     ggCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGGCGAACCAGCCCTGCACCTGGGCTTGCCGGGCCCGc                 <  2:593081/150‑1 (MQ=255)                                                                                                                                       ccGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGACCCAGCCCTGCACCTGGGCTTGCAGGGCCCGCTg               >  1:167993/1‑150 (MQ=255)                                                                                                                                        cGTGGGTGGCTGTACTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCACGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAGGGCCCGCTGa              <  2:603131/150‑1 (MQ=255)                                                                                                                                         gtgggtggCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAGGGCCCGCTGAt             <  2:861621/150‑1 (MQ=255)                                                                                                                                          tgggtggCTGTCCTGGCTGACCCCACGCACGCCACGCGGGAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAGGGCCCGCTGATg            <  2:511565/150‑1 (MQ=255)                                                                                                                                           gggtggCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAGGGCCCGCTGATgg           <  1:148353/150‑1 (MQ=255)                                                                                                                                                  tGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCt                                                                                               <  2:394155/59‑1 (MQ=255)                                                                                                                                                  tGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCt                                                                                               >  1:394155/1‑59 (MQ=255)                                                                                                                                                    tCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGGCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAgg  >  2:710884/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GATGAGTGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTC‑GGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGG  >  NC_002947/3793758‑3794053

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.