New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4599330	32 (0.740)	5 (0.120)	5/240	NT	13.5%	coding (525/3627 nt)	PP_4071	membrane protein
	?	NC_002947	= 4599354	34 (0.830)					coding (501/3627 nt)	PP_4071	membrane protein

CGAAGACTCAACGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAGGTACCACGGCAATCGGTACAGCGCGCGACGCCCACCGGCATTGTCCAG  >  NC_002947/4599213‑4599500                                                                                                                                              |                                                                                                                                                   cGAAGACTCAACGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGcgccggga                                                                                                                                            <  1:839519‑M2/150‑9 (MQ=255)  gAAGACTCAACGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGcc                                                                                                                                           >  2:1033164/1‑150 (MQ=255)        tCAACGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGcc                                                                                                                                     >  1:740022/1‑150 (MQ=255)        ccaACGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCCATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCCAGCGCAGGCGCTCGCCTAccccgtggggtggtg                                                                                                                                     >  2:369227‑M2/2‑135 (MQ=255)          aaCGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCAACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCtt                                                                                                                                   <  1:292672/150‑1 (MQ=255)             gTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTc                                                                                                                                >  1:1060025/1‑150 (MQ=255)                    gAGTGACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCgg                                                                                                                         <  2:515675/150‑1 (MQ=255)                    gAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGGCTTTCTCGTGCCTGCGCCTTGTCGATGCgg                                                                                                                         <  1:578299/150‑1 (MQ=255)                      gTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGt                                                                                                                       >  1:1071413/1‑150 (MQ=255)                         aCTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCaa                                                                                                                    >  1:822185/1‑150 (MQ=255)                          cTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAAc                                                                                                                   <  1:288715/150‑1 (MQ=255)                             cccAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGGCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCCATGCGGGTCAACgcg                                                                                                                >  2:19250/1‑148 (MQ=255)                              ccAGCGAAGCTTCGGGGGCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTCGGCGAGCGCCTGCGCTGGCTGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACgaga                                                                                                               <  2:438197/150‑1 (MQ=39)                                aGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGaaa                                                                                                             >  2:1064312/1‑150 (MQ=255)                                 gCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGt                                                                                                                                 >  2:255381/1‑129 (MQ=255)                                 gCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGt                                                                                                                                 <  1:255381/129‑1 (MQ=255)                                 gCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGCCGGCCAGCGCAGGCGCTCGCCTAccccgtggggtggt                                                                                                                                      <  2:779159‑M2/124‑15 (MQ=255)                                 gCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGCCGGCCAGCGCAGGCGCTCGCCTAccccgtggggtggt                                                                                                                                      >  1:779159‑M2/1‑110 (MQ=255)                                   gAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACtt                                                                                                          <  1:1064312/150‑1 (MQ=255)                                                                          gggTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGgcctgc                                                                   <  2:1071413/150‑1 (MQ=255)                                                                          gggTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGgcctgc                                                                   <  2:884787/150‑1 (MQ=255)                                                                               gatgatCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGgc                                                              >  1:955506/1‑150 (MQ=255)                                                                               gatgatCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCNGgc                                                              <  2:702358/150‑1 (MQ=255)                                                                                    tCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCa                                                         <  2:822185/150‑1 (MQ=255)                                                                                          cctcatTGCTCTTCCACCTCCCGCCGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGACACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTCCCTGTCGCCCAGCACGa                                                   <  2:280756/148‑1 (MQ=255)                                                                                            tcatTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAgg                                                 <  2:928848/150‑1 (MQ=255)                                                                                                 gCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGACCAAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAGGTACCa                                            <  1:357075/150‑1 (MQ=255)                                                                                                   tGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAGGTACCACg                                          <  2:1060025/150‑1 (MQ=255)                                                                                                   tGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAGGTACCACg                                          >  1:322095/1‑150 (MQ=255)                                                                                                          ccaccCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTgg                                                               <  1:651776/122‑1 (MQ=255)                                                                                                          ccaccCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTgg                                                               >  2:651776/1‑122 (MQ=255)                                                                                                             ccccACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAGGTACCACGGCAATCGGTa                                <  1:225288/150‑1 (MQ=255)                                                                                                             ccccACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCATGCCTGGCGCCCAGCACGAGGTACCACGGCAATCGGTa                                >  1:1096186/1‑150 (MQ=255)                                                                                                                cACGGGGTAGGCGAGCGCCTGCGCTGGCCGGccccgtggggtggtggatcagcaatgatgcggtgatcatcgacccgcccggtgcctttatca                                                                                      <  2:1035471‑M2/93‑63 (MQ=255)                                                                                                                cACGGGGTAGGCGAGCGCCTGCGCTGGCCGGccccgtggggtggtggatcagcaatgatgcggtgatcatcgacccgcccggtgcctttatca                                                                                      >  1:1035471‑M2/1‑31 (MQ=255)                                                                                                                      gTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAGGTACCACGGCAATCGGTACAGcgcgcg                       >  2:220006/1‑150 (MQ=255)                                                                                                                       tAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAGGTACCACGGCAATCGGTACAGCGCGCGa                      <  1:1033164/150‑1 (MQ=255)                                                                                                                                  cTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAGGTACCACGGCAATCGGTACAGCGCGCGACGCCCACCGGc           >  1:824211/1‑150 (MQ=255)                                                                                                                                  cTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAGGTACCACGGCAATCGGTACAGCGCGCGACGCCCACCGGc           >  1:155189/1‑150 (MQ=255)                                                                                                                                     cgcTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAGGTACCACGGCAATCGGTACAGCGCGCGACGCCCACCGGCAtt        <  2:689347/150‑1 (MQ=255)                                                                                                                                        tGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAGGTACCACGGCAATCGGTACAGCGCGCGACGCCCACCGGCATTGTc     <  2:1096186/150‑1 (MQ=255)                                                                                                                                           ccggccCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAGGTACCACGGCAATCGGTACAGCGCGCGACGCCCACCGGCATTGTCCAg  <  2:1100605/150‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                   CGAAGACTCAACGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAGGTACCACGGCAATCGGTACAGCGCGCGACGCCCACCGGCATTGTCCAG  >  NC_002947/4599213‑4599500

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.