New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5120200	48 (1.110)	4 (0.100)	4/244	NT	8.0%	coding (104/558 nt)	PP_4506	nitroreductase family protein
	?	NC_002947	= 5120242	46 (1.110)					coding (62/558 nt)	PP_4506	nitroreductase family protein

TTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACGGTTGAGCAATGCGTCGAGAGCCTCCATCGGCTACCCTCCTGGCAGGTGAATGTGCGGCCATTCTAGCGTTTACATCACCAGACCCATAGGTAGAATGGC  >  NC_002947/5120098‑5120375                                                                                                                                                 |                                                                                                                                      ttGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGgcgcc                                                                                                                                  <  2:1105481‑M2/150‑6 (MQ=255)          aCGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGggtcggtc                                                                                                                         >  2:579601/1‑150 (MQ=255)              cTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGCTGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGc                                                                                                                     >  2:465809/1‑150 (MQ=255)               ttCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCg                                                                                                                    >  2:671356/1‑150 (MQ=255)                tCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGt                                                                                                                   <  1:285434/150‑1 (MQ=255)                tCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGt                                                                                                                   <  1:708807/150‑1 (MQ=255)                     gAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCAc                                                                                                              <  2:329988/150‑1 (MQ=255)                          gCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGaaa                                                                                                         >  2:941776/1‑150 (MQ=255)                              aCCCAGCTTCTCGCGGCCCTGGCCTTCTATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACg                                                                                                     >  2:987320/1‑150 (MQ=255)                              aCCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCACGCTGGGCGGCATTGGGCGCCGGGTCGGTCAAGCGTGGACCGGAAACACg                                                                                                     >  2:587154/1‑150 (MQ=255)                                 cAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACg                                                                                                     >  1:105229/1‑147 (MQ=255)                                 cAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACg                                                                                                     <  2:105229/147‑1 (MQ=255)                                     ttCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACGGTTGAGc                                                                                              <  2:728626/150‑1 (MQ=255)                                        tcGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCATGCGTGTCACGGAAACACGGTTGAGCAAt                                                                                           <  1:780508/150‑1 (MQ=255)                                          gcgGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACGGTTGAGCAATGc                                                                                         >  1:330477/1‑150 (MQ=255)                                              cccTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCCACTGGCCGTGATCAGGGGCGCGAAGGCAAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACGGTTGAGCAATGCGTCg                                                                                     >  2:402418/1‑150 (MQ=255)                                              cccTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACGGTTGAGCAATGCGTCg                                                                                     >  1:118049/1‑150 (MQ=255)                                                cTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACGGTTGAGCAATGCGTCgag                                                                                   <  1:1010628/150‑1 (MQ=255)                                                 tGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGAACGGAAACACGGTTGAGCAATGCGTCgaga                                                                                  <  1:579601/150‑1 (MQ=255)                                                   gCCTTCGATGGTTAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCCCGCTGGGCGGCATTGGGCGCTGGGTCGGTCAGGCGTGGCACGGAAACACGGTTGAGCAATGCGTCGAGAGc                                                                                <  2:618095/150‑1 (MQ=255)                                                      ttCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACGGtt                                                                                                  <  2:773399/129‑1 (MQ=255)                                                      ttCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACGGtt                                                                                                  >  1:773399/1‑129 (MQ=255)                                                            ggTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACGGTTGAGCAATGCGTCGAGAGCCTCCATCgg                                                                       <  1:788155/150‑1 (MQ=255)                                                             gTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACGGTTGAGCAATGCGTCGAGAGCCTCCATCGGc                                                                      <  1:584695/150‑1 (MQ=255)                                                               aaGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACGGTTGAGCTATGCGTCGAGAGCCTCCATCGGCTa                                                                    <  1:477241/150‑1 (MQ=255)                                                                    aaCGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACGGTTGAGCAATGCGTCGAGAGCCTCCATCGGCTACcctc                                                               <  1:144397/150‑1 (MQ=255)                                                                     aCGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACGGTTGAGCAATGCGTCgaga                                                                                  >  2:83883/1‑130 (MQ=255)                                                                     aCGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACGGTTGAGCAATGCGTCgaga                                                                                  >  2:83875/1‑130 (MQ=255)                                                                     aCGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACGGTTGAGCAATGCGTCgaga                                                                                  <  1:83875/130‑1 (MQ=255)                                                                     aCGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACGGTTGAGCAATGCGTCgaga                                                                                  <  1:83883/130‑1 (MQ=255)                                                                       gCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACGGTTGAGCAATGCGTCGAGAGCCTCCATCGGCTACCCTCCTg                                                            >  2:503099/1‑150 (MQ=255)                                                                                   gCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACGGTTGAGCAATGCGTCGGGAGCCTCCATCGGCTACCCTCCTGGCAGGTGAAtct                                                >  2:900502/1‑148 (MQ=255)                                                                                             aTCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACGGTTGAGCAATGCGTCGAGAGCCTCCATCGGCTACCCTCCTGGCAGGTGAATGTGCGGCCATTc                                      <  1:941776/150‑1 (MQ=255)                                                                                                cGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACGGTTGAGCAGTGCGTCGAGAGCCTCCATCGGCTACCCTCCTGGCAGGTGAATGTGCGGCCATTCTAg                                   <  1:751706/150‑1 (MQ=255)                                                                                                 ggggCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGgcgccccggatcacggccagctgcggccgtggcgttttcttaccatcgaaggccagggccgcgagaagctgggtgagctgttcgccgacgcagtggagcac                                  <  2:79162‑M2/150‑102 (MQ=255)                                                                                                 ggggCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACGGTTGAGCAATGCGTCGAGAGCCTCCATCGGCTACCCTCCTGGCAGGTGAATGTGCGGCCATTCTAGc                                  <  1:987320/150‑1 (MQ=255)                                                                                                    gcgcgcAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTTACCTTTAAACACGGTTGAGCAATGCGTCGAGAGCCTCCATCGGCTACCCTCCTGGCAGGTGAATGTGCGGCCATTCTAGCGtt                               <  1:465809/150‑1 (MQ=255)                                                                                                       cgcAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGgcgccccggatcacggccggctgcggccgtggcgttttcttaccatcgaaggccagggccgcgagaagctgggtgagctgttcgccgaagccgtgcagcacaagggc                            <  1:764691‑M2/150‑108 (MQ=255)                                                                                                       cgcAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACGGTTGAGCAATGCGTCGAGAGCCTCCATCGGCTACCCTCCTGGCAGGTGAATGTGCGGCCATTCTAGCGTTTAc                            <  1:1105481/150‑1 (MQ=255)                                                                                                        gcAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGgcgccccggatcacggccagctgcggccgtggcgttttcttaccatcgaaggccagggccgcgagaagctgggt                                                             >  1:894214‑M2/1‑42 (MQ=255)                                                                                                        gcAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGgcgccccggatcacggccagctgcggccgtggcgttttcttaccatcgaaggccagggccgcgagaagctgggt                                                             <  2:894214‑M2/116‑75 (MQ=255)                                                                                                                gCCTGTAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGTGTCGGTCAGGCGTGGCACGGAAACACGGTTGAGCAATGCGTCGAGAGCCTCCATCGGCTACCCTTCTGGCAGGTGAATGTGCGGCCATTCTAGCGTTTACATCACCAGa                   <  2:363143/150‑1 (MQ=255)                                                                                                                gCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACGGTTGAGCAATGCGTCGAGAGCCTCCATCGGCTACCCTCCTGGCAGGTGAATGTGCGGCCATTCTAGCGTTTACATCACCAGa                   <  1:13702/150‑1 (MQ=255)                                                                                                                gCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACGGTTGAGCAATGCGTCGAGAGCCTCCATCGGCTACCCTCCTGGCAGGTGAATGTGCGGCCATTCTAGCGTTTACATCACCAGa                   <  1:503099/150‑1 (MQ=255)                                                                                                                 ccTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACGGTTGAGCAATGCGTCGAGAGCCTCCATCGGCTACCCTCCTGGCAGGTGAATGTGCGGCCATTCTAGCGTTTACATCACCAGAc                  <  2:979447/150‑1 (MQ=255)                                                                                                                 ccTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACGGTTGAGCAATGCGTCGAGAGCCTCCATCGGCTACCCTCCTGGCAGGTGAATGTGCGGCCATTCTAGCGTTTACATCACCAGAc                  <  2:981273/150‑1 (MQ=255)                                                                                                                  cTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACGGTTGAGCAATGCGGCTAGAGCCTCCCTAGGCTACCCTCCTGGCAGGTGAATGTGCGGCCATTCTAGCGTTTACATCACCAGAcc                 >  2:1112850/1‑150 (MQ=255)                                                                                                                         cgcgcCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAATCACGGTTGAGCAATGCGTCGAGAGCCGCCATCGGCTACCCTCCTGGCAGGCGAATGTGCGGCCATTCTAGCGTTTACATCCCCATACCCATAGGt          <  2:76365/149‑1 (MQ=255)                                                                                                                                 gcgcTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACGGTTGAGCAATGCGTCGAGAGCCTCCATCGGCTACCCTCCTGGCAGGTGAATGTGCGGCCATTCTAGCGTTTACATCACCAGACCCATAGGTAGAATGgc  <  1:402418/150‑1 (MQ=255)                                                                                                                                     tGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACGGTTGAGCAATGCGTCGAGAGCCTCCATc                                                                         <  1:596/75‑1 (MQ=255)                                                                                                                                     tGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACGGTTGAGCAATGCGTCGAGAGCCTCCATc                                                                         >  2:596/1‑75 (MQ=255)                                                                                                                                                 |                                                                                                                                      TTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATTGGGCGCCGGGTCGGTCAGGCGTGGCACGGAAACACGGTTGAGCAATGCGTCGAGAGCCTCCATCGGCTACCCTCCTGGCAGGTGAATGTGCGGCCATTCTAGCGTTTACATCACCAGACCCATAGGTAGAATGGC  >  NC_002947/5120098‑5120375

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.