New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5162643	28 (0.650)	7 (0.200)	7/202	NT	19.1%	intergenic (+118/+83)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
	?	NC_002947	= 5162675	37 (1.080)					intergenic (+150/+51)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase

GCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGCCTTTGGCCAGGTCATCCTGGTACAG  >  NC_002947/5162526‑5162821                                                                                                                                                      |                                                                                                                                                   gCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTAc                                                                                                                                                    <  2:644839/150‑1 (MQ=255)      acCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACctgtg                                                                                                                                               >  1:104272‑M2/1‑145 (MQ=255)       cccTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACctgtgg                                                                                                                                              >  2:167295‑M2/1‑144 (MQ=255)           gctctgctTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACctgtgggagc                                                                                                                                          >  1:1064752‑M2/1‑140 (MQ=255)                gctTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACctgtgggagcgggca                                                                                                                                     <  1:837289‑M2/150‑16 (MQ=255)                 ctTCACCTGAAGCGGGAAACGCTGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACctgtgggagcgggcaa                                                                                                                                    >  2:404397‑M2/1‑134 (MQ=255)                    cACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACctgtgggagcgggcaagcc                                                                                                                                 >  2:104143‑M2/1‑131 (MQ=255)                               ggAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTCGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGc                                                                                                                      <  2:707527/150‑1 (MQ=255)                                      ccGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCGTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACa                                                                                                               >  2:585530/1‑150 (MQ=255)                                       cGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACGGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAg                                                                                                              <  2:837289/150‑1 (MQ=255)                                                        tCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAgc                                                                                             <  1:830718/150‑1 (MQ=255)                                                            gCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCtt                                                                                         >  1:1107228/1‑150 (MQ=255)                                                            gCTTCTTTTTGTCCGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCtt                                                                                         >  2:635323/1‑150 (MQ=255)                                                                  ttttGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCGCCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGgcgc                                                                                                          >  1:368217/1‑127 (MQ=255)                                                                  ttttGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGGGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGgcgc                                                                                                          <  2:368217/127‑1 (MQ=255)                                                                               aaaTGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCa                                                                      >  1:930490/1‑150 (MQ=255)                                                                                         gCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGgcggc                                                                                                         <  1:318013/105‑3 (MQ=255)                                                                                         gCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGcc                                                                                                         >  2:318013/1‑105 (MQ=255)                                                                                           cccTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGAACAGGCGCCTGAGGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATAcccc                                                          >  1:520997/1‑150 (MQ=255)                                                                                            ccTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCg                                                         >  1:1071166/1‑150 (MQ=255)                                                                                                cgcgGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCAcc                                                     <  2:1071166/150‑1 (MQ=255)                                                                                                       ttGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAg                                              <  1:585530/150‑1 (MQ=255)                                                                                                          cccGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTc                                           >  2:817446/1‑150 (MQ=255)                                                                                                           ccGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACctgtgggagcgggcaagcccgcgaaggggccggcgcatttcacacagacaaaaagaagcgggaaacgccggatggggtcggcgtttcccgcttcaggtgaa                                               >  1:871676‑M2/1‑44 (MQ=255)                                                                                                           ccGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACctgtgggagcgggcaagcccgcgaaggggccggcgcatttcacacagacaaaaagaagcgggaaacgccggatggggtcggcgtttcccgcttcaggtgaa                                               <  2:871676‑M2/145‑102 (MQ=255)                                                                                                           ccGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCa                                          >  1:464162/1‑150 (MQ=255)                                                                                                            cGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCaa                                         >  1:191095/1‑150 (MQ=255)                                                                                                              cTCCCCCATCATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAaca                                       <  1:326032/150‑1 (MQ=255)                                                                                                               tCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACctgtgggagcgggcaagcccgcgaaggggccggcgcatttcacacagacaaaaagaagcgggaaacgccggatggggtcggcgtttcccgcttcaggtgaagcagagcag                                      <  1:1109591‑M2/150‑111 (MQ=255)                                                                                                                cccACAGTATCACCACAGACCTTGAGAACTGTGCTGTACctgtgggagcgggcaagcccgcgaaggggccggtgcatttcacacagacaaaaagaagcgggaaacgccggatggggtcggcgtttcccgcttcaggtgaagcagagcagg                                     <  1:930844‑M2/150‑112 (MQ=255)                                                                                                                  cacaGTATCACCACAGACCTTGAGAACTGTGCTGTACctgtgggagcgggcaagcccgcgaaggggccggcgcatttcacacagacaaaaagaagcgggaaacgccggatggggtcggcgtttcccgcttcaggtgaagcagagcagggt                                   <  1:1011738‑M2/150‑114 (MQ=255)                                                                                                                   aaaGTATCACCACAGACCTTGAGAACTGTGCTGTGCCTGTGGGGGCGGGCAAGCCGGAGAAGAGGCCGTAACAGGCGCGTGATGAATCAGCGCTTGCGCCGAAGCACACTACCAATCGCATACCCCGCACCAAACGAGCGCAACACcccc                                  >  2:488638/3‑150 (MQ=255)                                                                                                                         tCACCACAGACCTTGAGAACTGTGCTGTACctgtgggagcgggcaagcccgcgaaggggccggcgcatttcacacagacaaaaagaagcgggaaacgccggatggggtcggcgtttcccgcttcaggtgaagcagagcagggtgttgctt                            >  2:1109591‑M2/1‑30 (MQ=255)                                                                                                                          caccacAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGc                           >  2:681988/1‑150 (MQ=255)                                                                                                                           accacAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAgc                                                                                             <  1:77673/83‑1 (MQ=255)                                                                                                                           accacAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAgc                                                                                             >  2:77673/1‑83 (MQ=255)                                                                                                                           accacAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGTGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCaaa                                                  <  1:250899/126‑1 (MQ=255)                                                                                                                           accacAGACCTTGAGAACTGTGCTATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGTGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCaaa                                                  >  2:250899/1‑126 (MQ=255)                                                                                                                             cacaGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTgc                                                                                       <  2:156408/87‑1 (MQ=255)                                                                                                                             cacaGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTgc                                                                                       >  1:156408/1‑87 (MQ=255)                                                                                                                              acaNACCTTGAGAACTGTGCTGTACCTGTGGGCACGCGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGCAGCACACAACCAATCGAATAACCCGCACCAAATGGGCTCAACACGCCCAACGAGCCgtt                       >  2:695292/1‑150 (MQ=255)                                                                                                                              acaGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGc                           <  2:767034/146‑1 (MQ=255)                                                                                                                              acaGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGc                           >  1:767034/1‑146 (MQ=255)                                                                                                                                aGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGCCTTTgg                     >  1:656909/1‑150 (MQ=255)                                                                                                                                 gACCTTGAGAACTGTGCTGTACctgtgggagcgggcaagcccgcgaaggggccggtgcatttcacacagacaaaaagaagcgggaaacgccggatggggtcggcgtttcccgcttcaggtgaagcagagcagggtgttgcttagaacttg                    >  2:930844‑M2/1‑22 (MQ=255)                                                                                                                                    cTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGCCTTTGGCCAg                 <  1:681988/150‑1 (MQ=255)                                                                                                                                    cTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCGCAACACGCCCAACGAGCCTTTGGCCAg                 >  1:841472/1‑150 (MQ=255)                                                                                                                                          aaCTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGCCTTTGGCCAGGTCATc           >  1:1073461/1‑150 (MQ=255)                                                                                                                                             tgtgCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATcaca                                                                            >  1:797979/1‑82 (MQ=255)                                                                                                                                             tgtgCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATcaca                                                                            <  2:797979/82‑1 (MQ=255)                                                                                                                                             tgagCTGTACCTGTGGGAGCGGGAAAGCCCGCGCAGAGGCCGTAACAGGCGCCTGAATAATCAGCGCTTGCGCAGAATCACACTACCAAGCGAATACCCCGCACCAAACGAGCGCAACACGCCCAACGAGCCTTTGGCCAGGTCATCCTg        >  2:548059/4‑150 (MQ=255)                                                                                                                                              gtgCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGCCTTTGGCCAGGTCATCCTgg       <  2:1107228/150‑1 (MQ=255)                                                                                                                                                  tGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGa                                                                                  <  2:1012704/71‑1 (MQ=255)                                                                                                                                                  tGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGa                                                                                  <  2:1012258/71‑1 (MQ=255)                                                                                                                                                  tGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGa                                                                                  >  1:1012704/1‑71 (MQ=255)                                                                                                                                                  tGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGa                                                                                  >  1:1012258/1‑71 (MQ=255)                                                                                                                                                   gTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGCCTTTGGCCAGGTCATCCTGGTACAg  <  2:464162/150‑1 (MQ=255)                                                                                                                                                   gTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGCCTTTGGCCAGGTCATCCTGGTACAg  <  1:737932/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                   GCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGCCTTTGGCCAGGTCATCCTGGTACAG  >  NC_002947/5162526‑5162821

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.