| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5190394 | 26 (0.600) | 3 (0.080) | 3/234 | NT | 11.1% | intergenic (‑81/+93) | PP_4570/cysK | hypothetical protein/cysteine synthase A |
| ? | NC_002947 | = 5190411 | 24 (0.600) | intergenic (‑98/+76) | PP_4570/cysK | hypothetical protein/cysteine synthase A | |||||
CCGAAAAACACCAGCAAGACACCCGCCTTGGCTGCAAAGGAAAAGGTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGG > NC_002947/5190264‑5190560 | ccGAAAAACACCAGCAAGACACCCGCCTTGGCTGCAAAGGAAAAGGTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGgg < 1:970417‑M2/150‑3 (MQ=255) tgctgttcagcgacatgttcagcgagcaggaaacccagcagtaatcggccttgccgctgatccggcgcaacgatcggcggactggtttattgcaaaatcttcatgaatgCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCAtt > 2:952282‑M1/110‑150 (MQ=255) acacCCGCCTTGGCTGCAAAGGAAAAGGTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGaa < 1:56234/150‑1 (MQ=255) cttgCTGCAAAGGAAAAGGTCATGCTTTCACTCCTTGAGGAAGAGTCACGGTTGCGATGCCTGCTCTCCAGAAAATCATCCTGCAATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCa > 2:1119321/4‑150 (MQ=255) tGCAAAGGAAAAGGTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATaaa > 2:94105/1‑150 (MQ=255) cagcagtaatcggccttgccgctgatccggcgcaacgatcggcggactggtttattgcaaaatcttcatgaatgCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATc < 1:213233‑M1/36‑1 (MQ=255) cagcagtaatcggccttgccgctgatccggcgcaacgatcggcggactggtttattgcaaaatcttcatgaatgCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATc > 2:213233‑M1/75‑110 (MQ=255) cTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCa > 2:429646/1‑150 (MQ=255) ttGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAg > 2:656634/1‑150 (MQ=255) gatctagagTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCg < 2:861564/145‑1 (MQ=255) gAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCg < 2:535933/150‑1 (MQ=255) gAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCg > 1:535933/1‑150 (MQ=255) gAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCg < 1:606757/150‑1 (MQ=255) gccgctgatccggcgcaacgatcggcggactggtttattgcaaaatcttcatgaatgCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGAt < 1:318699‑M1/35‑1 (MQ=255) gccgctgatccggcgcaacgatcggcggactggtttattgcaaaatcttcatgaatgCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGAt > 2:318699‑M1/58‑92 (MQ=255) gagTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCCTAATACCCTAATAAACAGCACCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATGTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCggggatc > 1:861564/1‑145 (MQ=255) gagTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAgg < 1:656634/150‑1 (MQ=255) tgcgctgcCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATTCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTActg < 1:315626/150‑1 (MQ=255) tgcctgcTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAgg > 2:768490/1‑135 (MQ=255) tgcctgcTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAgg < 1:768490/135‑1 (MQ=255) cctgcTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGtt > 1:420327/1‑150 (MQ=255) tcCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCt > 1:576859/1‑150 (MQ=255) aGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGc > 2:935055/1‑150 (MQ=255) aGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGc > 2:202474/1‑150 (MQ=255) aaaaTCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTg > 1:969819/1‑150 (MQ=255) atcCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGggcgggatcggtttatgatggcaggatgattttccgctcaccaggcagcgcagccgtgactcttcctcaaggcgcgaaagcatgaccttttcctttgcagccaagg < 1:192311‑M2/150‑107 (MQ=255) tcCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGggcgggatcggtttatgatggcaggatgattttctggagagcaggcagcgcagccgtgactcttcctcaaggagtgaaagc < 1:775168‑M2/124‑82 (MQ=255) tcCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGggcgggatcggtttatgatggcaggatgattttctggagagcaggcagcgcagccgtgactcttcctcaaggagtgaaagc > 2:775168‑M2/1‑43 (MQ=255) tGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGc < 2:969819/150‑1 (MQ=255) gCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCt < 1:1119321/150‑1 (MQ=255) catcatAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTccgc < 2:1081848/80‑1 (MQ=255) catcatAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTccgc > 1:1081848/1‑80 (MQ=255) tAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTAtcgct > 1:575331/1‑150 (MQ=255) gggcgggATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCgg < 2:65973/150‑1 (MQ=255) gggcgggATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCgg > 2:378433/1‑150 (MQ=255) | CCGAAAAACACCAGCAAGACACCCGCCTTGGCTGCAAAGGAAAAGGTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGG > NC_002947/5190264‑5190560 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |