New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5634754	45 (1.040)	4 (0.100)	4/242	NT	8.5%	intergenic (+279/+104)	putA/PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein
	?	NC_002947	= 5634797	43 (1.040)					intergenic (+322/+61)	putA/PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein

GCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCAAAGCAGACAGCTGTGCTGCCATAAGCCCAATACCCAACAGCATCCAAAGCCAATTTGC  >  NC_002947/5634648‑5634941                                                                                                                                                      |                                                                                                                                                 gCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAgc                                                                                                                                                  >  1:75898/1‑150 (MQ=255)       ccTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCgcgggt                                                                                                                                            >  1:266102‑M2/1‑144 (MQ=255)         tttCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTg                                                                                                                                          >  1:755203/1‑150 (MQ=255)               gggTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCgg                                                                                                                                    <  2:828184/150‑1 (MQ=255)                ggTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCggg                                                                                                                                   <  1:540960/150‑1 (MQ=255)                ggTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCACGGGTTGGATCggg                                                                                                                                   <  1:1068523/150‑1 (MQ=255)                  tAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTAACAGACGTTCACTGTTTGCGCCACCACCGGATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGa                                                                                                                                 >  2:799830/1‑150 (MQ=37)                       ccGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATc                                                                                                                            >  2:604169/1‑150 (MQ=255)                            ccTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAg                                                                                                                       <  2:691316/150‑1 (MQ=255)                               ataCACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACAGTATTAAGCCAAGTAGAAGCTCGTTTTTCATCTTGTACTATCCGGAGCTc                                                                                                                    >  2:850425/1‑150 (MQ=21)                                             gCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGc                                                                                                      >  2:502554/1‑150 (MQ=255)                                                           gCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGCGCTCCCCTCAGACAGAGCTCCGGCCAAAAGtt                                                                                        <  2:625285/150‑1 (MQ=255)                                                           gCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGtt                                                                                        >  1:642177/1‑150 (MQ=255)                                                              ggTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCt                                                                                     >  2:631402/1‑150 (MQ=255)                                                                     ccGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCa                                                                              >  1:891749/1‑150 (MQ=255)                                                                       gcgAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCAtt                                                                            <  1:920497/150‑1 (MQ=255)                                                                        cgAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTg                                                                           <  2:891749/150‑1 (MQ=255)                                                                         gAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTgg                                                                          <  1:799830/150‑1 (MQ=255)                                                                         gAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCATATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGAGAGAGCTCCGGCCAAAAGTTGCTCAAACTATTgg                                                                          >  2:574918/1‑150 (MQ=255)                                                                          aaGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGt                                                                         <  1:882942/150‑1 (MQ=255)                                                                          aaGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGt                                                                         <  1:1100693/150‑1 (MQ=255)                                                                                     ccTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAAt                                                              <  1:878772/150‑1 (MQ=255)                                                                                         ctgGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCaaa                                                          <  1:1068931/150‑1 (MQ=255)                                                                                         ctgGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCaaa                                                          <  1:717459/150‑1 (MQ=255)                                                                                         ctgGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGAGCGGGGACTATCCGGAGCGCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACATTAGGTGAAAGCGCAATCaaa                                                          >  1:899532/1‑150 (MQ=255)                                                                                          tgGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCAAAg                                                         <  1:631402/150‑1 (MQ=255)                                                                                            gCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCAAAGCa                                                       >  2:488049/1‑150 (MQ=255)                                                                                              cAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGTGGGTTGGATCGGGGACTATCCGGAGCTCCCCACAGCGGAAGAGCCTGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCAAAGCAGa                                                     >  2:578941/1‑150 (MQ=255)                                                                                              cAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCTGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCAAAGCAGa                                                     >  1:675370/1‑150 (MQ=255)                                                                                              cAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCAAAGCAGa                                                     >  2:501236/1‑150 (MQ=255)                                                                                                 tttCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCgcgggtagaaattggccagcaggtccggcctcttcgcgggtgaacccgctcctacacgacggcctgtgc                                                                             <  1:672940‑M2/123‑70 (MQ=255)                                                                                                 tttCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCgcgggtagaaattggccagcaggtccggcctcttcgcgggtgaacccgctcctacacgacggcctgtgc                                                                             >  2:672940‑M2/1‑54 (MQ=255)                                                                                                        ccgccgTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCgcgggtagaaattggccagcaggtccggcctcttcgcgggtgaacccgctcctacacgacggcctgtgcatgt                                                                         <  1:142344‑M2/120‑74 (MQ=255)                                                                                                        ccgccgTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCgcgggtagaaattggccagcaggtccggcctcttcgcgggtgaacccgctcctacacgacggcctgtgcatgt                                                                         >  2:142344‑M2/1‑47 (MQ=255)                                                                                                        ccgccgTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCAAAGCAGACAGCTGtgct                                           <  1:920524/150‑1 (MQ=255)                                                                                                               tCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCAAAGCAGACAGCTGTGCTGCCATaa                                    <  2:935230/150‑1 (MQ=255)                                                                                                               tCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCAAAGCAGACAGCTGTGCTGCCATaa                                    <  1:501236/150‑1 (MQ=255)                                                                                                               tCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCAAAGCAGACAGCTGTGCTGCCATaa                                    <  1:502554/150‑1 (MQ=255)                                                                                                                 aCTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGt                                                                         <  1:35622/111‑1 (MQ=255)                                                                                                                 aCTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGt                                                                         >  2:35622/1‑111 (MQ=255)                                                                                                                   tGTTGCCGCCACCACCGTATCAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCAAAGCAGACAGCTGTGCTGCCATAAGccc                                >  1:563771/1‑150 (MQ=255)                                                                                                                     ttGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCAAAGCAGACAGCTGTGCTGCCATAAGCCCaa                              >  1:706977/1‑150 (MQ=255)                                                                                                                      tGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCAAAGCAGACAGCTGTGCTGCCATAAGCCCAAt                             <  1:488049/150‑1 (MQ=255)                                                                                                                        ccgccACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCAAAGCAGACAGCTGTGCTGCCATAAGCCCAATAc                           >  2:304889/1‑150 (MQ=255)                                                                                                                                accGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCAAAGCAGACAGCTGTGCTGCCATAAGCCCAATACCCAACAGc                   >  2:280914/1‑150 (MQ=255)                                                                                                                                 ccGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCAAAGCAGACAGCTGTGCTGCCATAAGCCCAATACCCAACAGCa                  >  2:152653/1‑150 (MQ=255)                                                                                                                                   gTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCAAAGCAGACAGCTGTGCTGCCATAAGCCCAATACCCAACAGCATc                <  1:280914/150‑1 (MQ=255)                                                                                                                                      ttAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCAAAGCAGACAGCTGTGCTGCCATAAGCCCAATACCCAACAGCATCCaa             <  2:75898/150‑1 (MQ=255)                                                                                                                                               gTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCAAAGCAGACAGCTGTGCTGCCATAAGCCCAATACCCAACAGCATCCAAAGCCAAttt    <  1:152653/150‑1 (MQ=255)                                                                                                                                               gTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTACGGCCAAAAGTTGCTAAAACCATTGGTGAAAGCGCAATCAAAGCAGACAGCTGTGCTGCCATAAGCCCAATACCCAACAGCATCCAAAGCCACttt    >  1:452212/1‑150 (MQ=255)                                                                                                                                                    aGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCAAAGCAGACAGCTGTGCTGCCATAAGCCCAATACCCAACAGCATCCAAAGCCAATTTGc  >  2:566185/1‑147 (MQ=255)                                                                                                                                                    aGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCAAAGCAGACAGCTGTGCTGCCATAAGCCCAATACCCAACAGCATCCAAAGCCAATTTGc  <  1:566185/147‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                 GCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCAAAGCAGACAGCTGTGCTGCCATAAGCCCAATACCCAACAGCATCCAAAGCCAATTTGC  >  NC_002947/5634648‑5634941

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.