New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5706735 =	44 (1.020)	3 (0.070)	3/244	NT	6.4%	coding (697/4761 nt)	PP_5009	hypothetical protein
	?	NC_002947	5706777 =	45 (1.080)					coding (739/4761 nt)	PP_5009	hypothetical protein

GTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTCCTGGGCGCACAGACCGGTGATCGGACAGCCTTTCGCCTTCCAGGCCAGGCAGCTGCTGAACGATATCCTT  >  NC_002947/5706630‑5706926                                                                                                                                                    |                                                                                                                                                      gTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTtcgt                                                                                                                                                     >  2:48911/1‑150 (MQ=255) gTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTtcgt                                                                                                                                                     >  1:593667/1‑150 (MQ=255)          aGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCAACAATTCAAGCCCTGCGGTTCGGTTCGTCGCCATGTc                                                                                                                                            <  1:366807/150‑1 (MQ=255)                                 aGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTgc                                                                                                                     <  2:593667/150‑1 (MQ=255)                                         tCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAAc                                                                                                             <  2:287095/150‑1 (MQ=255)                                            gAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGc                                                                                                          >  2:248439/1‑150 (MQ=255)                                                 gATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGa                                                                                                                                          <  2:709561/113‑1 (MQ=255)                                                 gATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGa                                                                                                                                          >  1:709561/1‑113 (MQ=255)                                                           cacacaCCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCCAACGATTCTGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCt                                                                                           >  2:317481/1‑150 (MQ=255)                                                            acacacCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTa                                                                                          >  2:359308/1‑150 (MQ=255)                                                                  cGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCtt                                                                                    <  2:655872/150‑1 (MQ=255)                                                                    ttACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGc                                                                                                       >  2:317114/1‑129 (MQ=255)                                                                    ttACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGc                                                                                                       <  1:317114/129‑1 (MQ=255)                                                                      aCCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAg                                                                                <  2:854054/150‑1 (MQ=255)                                                                        ccTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCttt                                                                                                                             >  2:112302/1‑103 (MQ=255)                                                                        ccTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCttt                                                                                                                             <  1:112302/103‑1 (MQ=255)                                                                        ccTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGc                                                                              <  2:77312/150‑1 (MQ=255)                                                                        ccTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGc                                                                              >  2:339077/1‑150 (MQ=255)                                                                          tACCGGATCTATTGCTCATCACCACAAGTAGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGGGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGt                                                                            >  2:306946/1‑150 (MQ=255)                                                                           aCCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGtt                                                                           <  1:48911/150‑1 (MQ=255)                                                                               gATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTcc                                                                       >  1:843123/1‑150 (MQ=255)                                                                                aTCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTCCt                                                                      <  1:1088009/150‑1 (MQ=255)                                                                                    aTTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTCCTGGgc                                                                  >  2:212005/1‑150 (MQ=255)                                                                                     ttGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTCCTGGgcg                                                                 >  2:231481/1‑150 (MQ=255)                                                                                        cTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTCCTGGGCGcac                                                              >  1:305173/1‑150 (MQ=255)                                                                                        cTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTCCTGGGCGcac                                                              >  1:343371/1‑150 (MQ=255)                                                                                         tcatcaCCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCa                                                                                                                                  >  1:592946/1‑81 (MQ=255)                                                                                         tcatcaCCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCa                                                                                                                                  <  2:592946/81‑1 (MQ=255)                                                                                         tcatcaCCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTCCTGGGCGcaca                                                             >  1:609739/1‑150 (MQ=255)                                                                                           atcaCCACAAGCGGCCACCGCAACCTGGTTCTTCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTCCTGGGCGCACAGa                                                           >  2:406428/1‑150 (MQ=255)                                                                                            tcaCCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTCCTGGGCGCACAGAc                                                          <  1:231481/150‑1 (MQ=255)                                                                                             caccacAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGt                                                                            >  2:1119027/1‑131 (MQ=255)                                                                                             caccacAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGt                                                                            <  1:1119027/131‑1 (MQ=255)                                                                                              accacAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCACAACTTTGCCACTGAGATGCACCAAACGCTTTTTAGATGCTAGCGCTGCGAGGCGTTGTCCTGGGCGCCCAGACCg                                                        >  1:519577/1‑150 (MQ=255)                                                                                                     gTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAgg                                                                               >  2:819770/1‑120 (MQ=255)                                                                                                     gTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAgg                                                                               <  1:819770/120‑1 (MQ=255)                                                                                                         caaccgcaaccTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTCCTGGGCGCACAGACCGGTGATCGGACa                                             <  1:211796/150‑1 (MQ=255)                                                                                                          AACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTCCTGGGCGCACAGACCGGTGATCGGACAg                                            <  2:388760‑M1/150‑1 (MQ=255)                                                                                                            ccgaaccgcagggcttgcattgcagaaccaggttgcggttCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTCCTGGGCGCACAGACCGGTGATCGGACAGcc                                          >  2:437873‑M2/41‑150 (MQ=255)                                                                                                              gaaccgcagggcttgcattgcagaaccaggttgcggttCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTCCTGGGCGCACAGACCGGTGAt                                                   >  1:666093‑M2/39‑139 (MQ=255)                                                                                                              gaaccgcagggcttgcattgcagaaccaggttgcggttCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTCCTGGGCGCACAGACCGGTGAt                                                   <  2:666093‑M2/101‑1 (MQ=255)                                                                                                                aaccTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTCCTGGGCGCACAGACCGGTGATCGGACAGCCTTTc                                      <  1:212005/150‑1 (MQ=255)                                                                                                                  ccTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTCCTGGGCGCACAGACCGGTGATCGGACAGCCTTTCGc                                    >  1:760608/1‑150 (MQ=255)                                                                                                                   cTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTCCTGGGCGCACAGACCGGTGATCGGACAGCCTTTCGcc                                   >  2:165020/1‑150 (MQ=255)                                                                                                                       ttCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCACAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGGTGTCCTGGGCGGCCAGCGCGGTGATCGGACATCCTTTCCCCCTcc                               >  1:191552/1‑150 (MQ=255)                                                                                                                          tgcaatgcaaGCCCTGCGGTTCGGTTTGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTCCTGGGCGCACAGACCGGTGATCGGACAGCCTTTCGc                                    <  1:668084/142‑1 (MQ=255)                                                                                                                          tgcaatgcaaGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTCCTGGGCGCACAGACCGGTGATCGGACAGCCTTTCGc                                    >  2:668084/1‑142 (MQ=255)                                                                                                                           ccaatgcaaGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTCCTGGGCGCACAGACCGGTGATCGGACAGCCTTTCGCCTTccaggc                           <  1:243226/149‑1 (MQ=255)                                                                                                                             aatgcaaGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTCCTGGGCGCACAGACCGGTGATCGGACAGCCTTTCGCCTTccaggcca                         <  2:305173/150‑1 (MQ=255)                                                                                                                                       cTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTCCTGGGCGCACAGACCGGTGATCGGACAGCCTTTCGCCTTCCAGGCCAGGCAgctgct               >  1:772111/1‑150 (MQ=255)                                                                                                                                       cTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTCCTGGGCGCACAGACCGGTGATCGGACAGCCTTTCGCCTTCCAGGCCAGGCAgctgct               <  2:159136/150‑1 (MQ=255)                                                                                                                                            gttcggttcgTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTCCTGGGCGCACAGACCGGTGATCGGACAGCCTTTCGCCTTCCAGGCCAGGCAGCTGCTGAAc           >  1:764055/1‑149 (MQ=255)                                                                                                                                            gttcggttcgTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTCCTGGGCGCACAGACCGGTGATCGGACAGCCTTTCGCCTTCCAGGCCAGGCAGCTGCTGAAc           <  2:764055/149‑1 (MQ=255)                                                                                                                                                    cgtcgCCATGTCGACCTGCCCAGCTTTGCCACTGAGATGAACAGGCCGACAGGCCATCGCGATCGCTTCGACGCGTTTTCCTGGGCGCACAGACCGGTGATCGGACAGCCTTTCGCCTTCCAGGCCAGGCAGCTGCTGAACGATATCCtt  <  1:248439/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      GTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTCCTGGGCGCACAGACCGGTGATCGGACAGCCTTTCGCCTTCCAGGCCAGGCAGCTGCTGAACGATATCCTT  >  NC_002947/5706630‑5706926

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.