New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1780096 =	42 (0.880)	15 (0.340)	13/244	2.5	27.7%	intergenic (+13/+93)	PP_1587/dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
	?	NC_002947	1780184 =	40 (0.920)					intergenic (+101/+5)	PP_1587/dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase

GGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTACGACCCCGGTA  >  NC_002947/1780047‑1780325                                                                                                                                          |                                                                                                                                              ggATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGt                                                                                                                                   >  1:850602/1‑150 (MQ=255)       gagtgagGAAAACTTCGGTTCAGTCAAGGAGACCCTATCAAGGCCCTTCGCGGGCGCGCCACGACGCACAGGTACTGTGCTGCCCTTGAAATCAGCGCTGTCCCTGAGGGCGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCa                                                                                                                             <  2:997592/150‑1 (MQ=255)              gCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGgc                                                                                                                      >  1:231099/1‑150 (MQ=255)                    cTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAAt                                                                                                                >  2:327746/1‑150 (MQ=255)                       ggTTCAGTCAAGTATACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATgcg                                                                                                             <  1:584129/150‑1 (MQ=255)                         ttCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAAGCGCGAATGCGCt                                                                                                           >  2:701989/1‑150 (MQ=255)                            aGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAgggg                                                                                                                                               >  1:277259/1‑111 (MQ=255)                            aGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAgggg                                                                                                                                               <  2:277259/111‑1 (MQ=255)                              tCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCAGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGACGGGGTTGATCAGCGGTTTTGTAGGAAGGCGCGAATGCGCTccgcc                                                                                                      >  2:347623/1‑150 (MQ=255)                                      aCCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGAt                                                                                              <  2:231099/150‑1 (MQ=255)                                      aCCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGAt                                                                                              >  1:421931/1‑150 (MQ=255)                                        ccTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAgggg                                                                                                                                               <  1:278489/99‑1 (MQ=255)                                        ccTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAgggg                                                                                                                                               >  2:278489/1‑99 (MQ=255)                                        ccTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGc                                                                                                                                      <  2:431460/108‑1 (MQ=255)                                        ccTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGc                                                                                                                                      >  1:431460/1‑108 (MQ=255)                                         cTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAACGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCa                                                                                           >  2:472242/1‑150 (MQ=255)                                              aaGGCCCTTCGCGGGCGCGCCCGCTCCGGCGGGTACTGCGCTGCGCTTGAAATCAGCGCTGTAACTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCgg                                                                                      >  1:31265/1‑150 (MQ=255)                                               aGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTcc                                                                                                         >  1:569085/1‑130 (MQ=255)                                               aGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTcc                                                                                                         <  2:569085/130‑1 (MQ=255)                                                 gCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGc                                                                                     >  1:1054211/1‑148 (MQ=255)                                                 gCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGc                                                                                     <  2:1054211/148‑1 (MQ=255)                                                  CCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCAGTTCGGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAg                                                                                  >  1:327746‑M1/1‑150 (MQ=255)                                                                  ccgctcccacaggtacagcgctgatttcaagcgcagcgcagtacctgtgggagcgggcgtgcccgcgaagggGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGcc                                                                  >  1:431956‑M2/73‑150 (MQ=255)                                                                  ccGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGcc                                                                  <  1:628228/150‑1 (MQ=255)                                                                      tcccacaggtacagcgctgatttcaagcgcagcgcagtacctgtgggagcgggcgtgcccgcgaagggGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATgc                                                              >  2:505316‑M2/69‑150 (MQ=255)                                                                        ccacaggtacagcgctgatttcaagcgcagcgcagtacctgtgggagcgggcgcgcccgcgaagggGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGAt                                                                                              >  1:725143‑M2/67‑116 (MQ=255)                                                                        ccacaggtacagcgctgatttcaagcgcagcgcagtacctgtgggagcgggcgcgcccgcgaagggGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGAt                                                                                              <  2:725143‑M2/50‑1 (MQ=255)                                                                          acaGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCAc                                                          <  1:431007/150‑1 (MQ=255)                                                                          acaGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCAc                                                          >  2:431007/1‑150 (MQ=255)                                                                            aggtacagcgctgatttcaagcgcagcgcagtacctgtgggagcgggcgcgcccgcgaagggGTTGATCAGCGGTTTTGCAGGaa                                                                                                                         <  2:511345‑M2/23‑1 (MQ=255)                                                                            aggtacagcgctgatttcaagcgcagcgcagtacctgtgggagcgggcgcgcccgcgaagggGTTGATCAGCGGTTTTGCAGGaa                                                                                                                         >  1:511345‑M2/63‑85 (MQ=255)                                                                              gtacagcgctgagttcaagcgcagcgcagtacctgtgggagcgggcgcgcccgcgaagggGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACgcgc                                                      >  2:674381‑M2/61‑150 (MQ=255)                                                                              gTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAg                                                                                                                                       >  1:530654/1‑69 (MQ=255)                                                                              gTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAg                                                                                                                                       <  2:530654/69‑1 (MQ=255)                                                                               aacagcgctgatttcaagcgcagcgcagtacctgtgggagcgggcgtgcccgcgaagggGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGAGGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGcc                                                     >  2:820956‑M2/60‑150 (MQ=255)                                                                                aCTGCGCTGCGCTTGAAGTGAGCGCTGGACCTGCGGGAGCGGGAGTGCCATCGAAGGGGGTGATCAGCGGGTTTGCAGGAAGGCGCGAAGGCGCTCCTCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGccc                                                    >  2:134077/1‑150 (MQ=255)                                                                                  agcgctgatttcaagcgcagcgcagtacctgtgggagcgggcgtgcccgcgaagggGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGt                                                                              <  1:577380‑M2/66‑1 (MQ=255)                                                                                  agcgctgatttcaagcgcagcgcagtacctgtgggagcgggcgtgcccgcgaagggGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGt                                                                              >  2:577380‑M2/57‑122 (MQ=255)                                                                                       tgcgctTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCAccc                                             >  1:391164/1‑150 (MQ=255)                                                                                         cgctTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCgg                                           <  1:595866/150‑1 (MQ=255)                                                                                         cgctTGAAATCAACGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCgg                                           <  1:472242/150‑1 (MQ=255)                                                                                         atttcaagcgcagcgcagtacctgtgggagcgggcgtgcccgcgaagggGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCgg                                           <  1:820956‑M2/101‑1 (MQ=255)                                                                                          gctTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCggg                                          <  2:421931/150‑1 (MQ=255)                                                                                           ctTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGt                                         >  2:1071717/1‑150 (MQ=255)                                                                                           ctTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGt                                         >  2:43228/1‑150 (MQ=255)                                                                                                   cAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCAc                                               <  2:233922/136‑1 (MQ=255)                                                                                                   cAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCAc                                               >  1:233922/1‑136 (MQ=255)                                                                                                     gcgcagtacctgtgggagcgggcgcgcccgcgaagggGTTGATCAGCGGTTTTGCAGGAAGGCGCGCATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATc                               <  1:674381‑M2/113‑1 (MQ=255)                                                                                                     gcgcTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTACGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATc                               <  2:850602/150‑1 (MQ=255)                                                                                                        ctgtacctgtgggagcgggcgcgcccgagaagggGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCAc                            <  1:76330‑M2/116‑1 (MQ=255)                                                                                                           tACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTc                         >  1:748246/1‑150 (MQ=255)                                                                                                           tACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGGGTTGCAGGAAGGCGCGAATGCGGTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTc                         >  2:797026/1‑150 (MQ=255)                                                                                                             ccTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAAGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCAc                       <  1:701989/150‑1 (MQ=255)                                                                                                                 ccttcgcgggcacgcccgcgaagggGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGa                   >  1:349190‑M2/26‑150 (MQ=255)                                                                                                                    tcgcgggcacgcccgcgaagggGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAg                <  2:349190‑M2/128‑1 (MQ=255)                                                                                                                     aGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATTCACTTCACGCCACAgt               <  2:264120/150‑2 (MQ=255)                                                                                                                                 cgcgaagggGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCGACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTACGACCCCGGt   >  2:834996‑M2/10‑150 (MQ=255)                                                                                                                                  gcgaagggGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTACGACCCCGGTa  <  1:505316‑M2/142‑1 (MQ=255)                                                                                                                                          |                                                                                                                                              GGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTACGACCCCGGTA  >  NC_002947/1780047‑1780325

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.