| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 42650 | 38 (0.720) | 7 (0.140) | 6/232 | NT | 15.6% | coding (594/1026 nt) | PP_0039 | hypothetical protein |
| ? | NC_002947 | = 42663 | 40 (0.810) | coding (607/1026 nt) | PP_0039 | hypothetical protein | |||||
ATCGCTGCTGGTATTGCGCCGCCTCCCAAAATGTCGTGGAAGGATCGCTTCGCCCTGGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/42495‑42650‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatgcgTC‑GCTGGAGCCGTCGCATGATGGTCAGTCGGTGGGAATACCCACAGATAACACTCATCCCGGTTGACCATGCTGATGAGCTCGCTTGGCCCCCGCATGGGGGAATTTGCAGCCAGGGCGAAGCGATCCTTCCACGACATTTTGG < NC_002947/42663‑42520 ATCGCTGCTGGTATTGCGCCGCCTCCCAAAATGTCGTGAAAGGATCGCTTCGCCCTCGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCAT > 2:161815/1‑150 ATGTCGTGGAAGGATCGCTTCGCCCTGGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGTC‑GCTGGAGCCGTCGCATGATGGT < 2:747033/150‑1 GAAGGATCGCTTCGCCCTGGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGTC‑GCTGGAGCCGTCGCATGATG < 1:363259/140‑1 GAAGGATCGCTTCGCCCTGGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGTC‑GCTGGAGCCGTCGCATGATG > 2:363259/1‑140 GAAGGATCGCTTCGCCCTGGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCAT < 1:1179046/115‑1 GAAGGATCGCTTCGCCCTGGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCAT > 2:1179046/1‑115 TCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGTC‑GCTGGAGCCGTCGCATGATGGT > 1:118313/1‑89 TCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGTC‑GCTGGAGCCGTCGCATGATGGT < 2:118313/89‑1 CACCGACTGACCATCATGCGACGGCTCCAG‑CGACGCATGATGGTCAGTCGGTGGGAATACCCACAGATAACACTCATCCCGGTTGACCATGCTGATGAGCTCGCTTGGCCCCCGCATGGGGGAATTTGCAGCCAGGGCGAAG < 1:1356622/142‑1 CACCGACTGACCATCATGCGACGGCTCCAG‑CGACGCATGATGGTCAGTCGGTGGGAATACCCACAGATAACACTCATCCCGGTTGACCATGCTGATGAGCTCGCTTGGCCCCCGCATGGGGGAATTTGCAGCCAGGGCGAAG > 2:1356622/1‑142 CATGCGTC‑GCTGGAGCCGTCGCATGATGGTCAGTCGGTGGGAATACCCACAGATAACACTCATCCCGGTTGACCATGCTGATGAGCTCGCTTGGCCCCCGCATGGGGGAATTTGCAGCCAGGGCGAAGCGATCCTTCCACGACATTTTGG < 1:1318997/150‑1 ATCGCTGCTGGTATTGCGCCGCCTCCCAAAATGTCGTGGAAGGATCGCTTCGCCCTGGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/42495‑42650‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatgcgTC‑GCTGGAGCCGTCGCATGATGGTCAGTCGGTGGGAATACCCACAGATAACACTCATCCCGGTTGACCATGCTGATGAGCTCGCTTGGCCCCCGCATGGGGGAATTTGCAGCCAGGGCGAAGCGATCCTTCCACGACATTTTGG < NC_002947/42663‑42520 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |