| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 42650 | 38 (0.720) | 7 (0.140) | 6/232 | NT | 15.6% | coding (594/1026 nt) | PP_0039 | hypothetical protein |
| ? | NC_002947 | = 42663 | 40 (0.810) | coding (607/1026 nt) | PP_0039 | hypothetical protein | |||||
GGTATTGCGCCGCCTCCCAAAATGTCGTGGAAGGATCGCTTCGCCCTGGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTGAAAAGACCCACCCGAGCGCAGAAATGGGCATGGGGTTCAGCATCATCGATTCCGGCTGGACCCGCCCCAAGTACCCGCTATCCAGGCAGTCACAAGAGACCTTCATCCAGTATTC > NC_002947/42504‑42799 | ggTATTGCGCCGCCTCCCAAAATGTCGTGGAAGGATCGCTTCGCCCTGGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACg < 2:1169306/150‑1 (MQ=255) cgccgcCTCCCAAAGTGTCGTGCAAGGATGGCTTCGCCCTGGCTGCAAATCCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCTACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTCCAg < 1:1137935/150‑1 (MQ=255) ccAAAATGTCGTGGAAGGATCGCTTCGCCCTGGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTc > 1:1194591/1‑138 (MQ=255) ccAAAATGTCGTGGAAGGATCGCTTCGCCCTGGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTc < 2:1194591/138‑1 (MQ=255) ccAAAATGTCGTGGAAGGATCGCTTCGCCCTGGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTCCAGC‑GAcgcatg < 1:1318997‑M2/150‑7 (MQ=255) aTGTCGTGGAAGGATCGCTTCGCCCTGGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGtcgctggagccgtcgcatgatggt < 2:747033‑M1/150‑25 (MQ=255) tCGTGGAAGGATCGCTTCGCCCTGGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTc < 2:418415/150‑1 (MQ=255) tgaaaGGATCGCTTCGCCCTGGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCAGCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTGTCttt < 2:225220/147‑1 (MQ=255) gAAGGATCGCTTCGCCCTGGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGtcgctggagccgtcgcatgatg > 2:363259‑M1/1‑118 (MQ=255) gAAGGATCGCTTCGCCCTGGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGtcgctggagccgtcgcatgatg < 1:363259‑M1/140‑23 (MQ=255) gAAGGATCGCTTCGCCCTGGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTgg < 2:599620/150‑1 (MQ=255) aaGGATCGCTTCGCCCTGGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGCGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTg < 1:1032710/148‑1 (MQ=255) aaGGATCGCTTCGCCCTGGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTg > 2:1032710/1‑148 (MQ=255) cTTCGCCCTGGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGTCG‑CTGGAGCCGTcgcatgatggtcagtcggtg < 1:1356622‑M2/142‑21 (MQ=255) cTTCGCCCTGGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGTCG‑CTGGAGCCGTcgcatgatggtcagtcggtg > 2:1356622‑M2/1‑122 (MQ=255) cTGGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTGAAAAGACCCACCCg > 1:1173164/1‑150 (MQ=255) tGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGGCCGTTTCTTTGGTGAAAAGACCCACCCGAgcgc < 1:186905/150‑1 (MQ=255) gCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTGAAAAGACCCACCCGAGCGCa < 1:161815/150‑1 (MQ=255) cccccATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTGAAAAGACCCACCCGAGCGCAGAAATgg < 2:810553/150‑1 (MQ=255) ccATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTGAAAAGACCCACCCGAGCGCAGAAATggg < 2:718171/148‑1 (MQ=255) ccATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTGAAAAGACCCACCCGAGCGCAGAAATggg > 1:718171/1‑148 (MQ=255) ccATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTGAAAAGACCCACCCGAGCGCAGAAATGGGCa > 1:1131822/1‑150 (MQ=255) aTGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGGCGGACCATCCTGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTGAAAAGACCCACCCGAGCGCAGAAATGGGCATg < 1:1032577/150‑1 (MQ=255) ccAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTGAAAAGACCCACCCGAGCGCAGAAATGGGCATGGGGTTCAGc < 2:1318997/150‑1 (MQ=255) aGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTGAAAAGACCCACCCGAGCGCAGAAATgg > 2:421067/1‑133 (MQ=255) aGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTGAAAAGACCCACCCGAGCGCAGAAATgg < 1:421067/133‑1 (MQ=255) tcatcaGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGtcgctggagccgtcgcatgatggt < 2:118313‑M1/89‑25 (MQ=255) tcatcaGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGtcgctggagccgtcgcatgatggt > 1:118313‑M1/1‑65 (MQ=255) tcatcaGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTGAAAAGACCCACCCGAGCGCAGAAATGGGCATGGGGTTCAGCATCATCGAtt < 2:1131822/150‑1 (MQ=255) gCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTGAAAAGACCCACCCGAGCGCAGAAATGGGCATGGGGTTCAGcatca < 2:580894/138‑1 (MQ=255) gCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTGAAAAGACCCACCCGAGCGCAGAAATGGGCATGGGGTTCAGcatca > 1:580894/1‑138 (MQ=255) gTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGt < 1:680142/87‑1 (MQ=255) gTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGt > 2:680142/1‑87 (MQ=255) ccGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTGAAAAGACCCACCCGAGCGCAGAAATGGGCATGGGGTTCAGCATCATCGATTCCGGCTGGACCCGccc > 2:686397/1‑150 (MQ=255) ggATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTGAAAAGACCCACCCGAGCGCAGAAATGGGCATGGGGTTCAGCATCATCGATTCCGGCTGGACCCGCCCCaa < 1:686397/150‑1 (MQ=255) gAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTGAAAAGac < 2:1182727/83‑1 (MQ=255) gAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTGAAAAGac > 1:1182727/1‑83 (MQ=255) gtTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTGAAAAGACCCACCCGAGCGCAGAAATGGGCATGGGGTTCAGCatcatc < 1:1211900/119‑1 (MQ=255) gtTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTGAAAAGACCCACCCGAGCGCAGAAATGGGCATGGGGTTCAGCatcatc > 2:1211900/1‑119 (MQ=255) tgGGTATTCCCACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTGAAAAGACCCACCCGAGCGCAGAAATGGGCATGGGGTTCAGCATCATCGATTCCGGCTGGACCCGCCCCAAGTACCCGCTATCCAgg > 1:837838/1‑150 (MQ=255) ttCCCGCCGACTGATCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTTAAAAGACCCACCCGAGCGCAGAAATGGCCGTGGGGTTCAGCATCATCGATTCCGGCTGGACCCGCCCCAAGTACCCGCTATCCAGGCAGTca < 2:335320/150‑1 (MQ=255) ttCCCACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTGAAAAGACCCACCCGAGCGCAGAAATGGGCATGGGGTTCAGCATCATCGATTCCGGCTGGACCCGCCCCAAGTACCCGCTATCCAGGCAGTca > 1:986114/1‑150 (MQ=255) ccACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTGAAAAGACCCACCCGAGCGCAGAAATGGGCATGGGGTTCAGCATCATCGATTCCGGCTg > 1:513411/1‑113 (MQ=255) ccACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTGAAAAGACCCACCCGAGCGCAGAAATGGGCATGGGGTTCAGCATCATCGATTCCGGCTg < 2:513411/113‑1 (MQ=255) cACCGACTGACCATCATGCGacggctccagcgacgcatgatggtcagtcggtgggaatacccacagataacactcatcccggttgaccatgctgatgagctcgcttggcccccgcatgggggaatttgcagccagggcgaag > 2:1356622‑M1/1‑20 (MQ=255) cACCGACTGACCATCATGCGacggctccagcgacgcatgatggtcagtcggtgggaatacccacagataacactcatcccggttgaccatgctgatgagctcgcttggcccccgcatgggggaatttgcagccagggcgaag < 1:1356622‑M1/142‑123 (MQ=255) aCCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTGAAAAGACCCACCCGAGCGCAGAAATGGGCATGGGGTTCAGCATCATCGATTCCGGCTGGACCCGCCCCAAGTACCCGCTATCCAGGCAGTCACAaga > 1:661603/1‑150 (MQ=255) aCTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTGAAAAGACCCACCCGAGCGCAGAAATGGGCATGGGGTTCa > 1:1300519/1‑88 (MQ=255) aCTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTGAAAAGACCCACCCGAGCGCAGAAATGGGCATGGGGTTCa < 2:1300519/88‑1 (MQ=255) aCCATCATGCGACGGCTCCAGC‑GAcgcatgatggtcagtcggtgggaatacccacagataacactcatcccggttgaccatgctgatgagctcgcttggcccccgcatgggggaatttgcagccagggcgaagcgatccttccacgacat < 2:747033‑M2/150‑127 (MQ=255) aCCATCATGCGACGGCTCCAGC‑GAcgcatgatggtcagtcggtgggaatacccacagataacactcatcccggttgaccatgctgatga < 2:118313‑M2/89‑66 (MQ=255) aCCATCATGCGACGGCTCCAGC‑GAcgcatgatggtcagtcggtgggaatacccacagataacactcatcccggttgaccatgctgatga > 1:118313‑M2/1‑24 (MQ=255) catcatGCGACGGCTCCAGC‑GAcgcatgatggtcagtcggtgggaatacccacagataacactcatcccggttgaccatgctgatgagctcgcttggcccccgcatgggggaatttgcagccagggcgaagcgatccttc > 2:363259‑M2/1‑22 (MQ=255) catcatGCGACGGCTCCAGC‑GAcgcatgatggtcagtcggtgggaatacccacagataacactcatcccggttgaccatgctgatgagctcgcttggcccccgcatgggggaatttgcagccagggcgaagcgatccttc < 1:363259‑M2/140‑119 (MQ=255) catGCGtcgctggagccgtcgcatgatggtcagtcggtgggaatacccacagataacactcatcccggttgaccatgctgatgagctcgcttggcccccgcatgggggaatttgcagccagggcgaagcgatccttccacgacattttgg < 1:1318997‑M1/150‑145 (MQ=255) atGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTGAAAAGACCCACCCGAGCGCAGAAATGGGCATGGGGTTCAGCATCATCGATTCCGGCt > 2:587243/1‑96 (MQ=255) atGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTGAAAAGACCCACCCGAGCGCAGAAATGGGCATGGGGTTCAGCATCATCGATTCCGGCt < 1:587243/96‑1 (MQ=255) gACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTGAAAAGACCCACCCGAGCGCAGAAATGGGCATGGGGTTCAGCATCATCGATTCCGGCTGGACCCGCCCCAAGTACCCGCTATCCAGGCAGTCACAAGAGACCTTCATCCAGTATTc < 2:837838/150‑1 (MQ=255) | GGTATTGCGCCGCCTCCCAAAATGTCGTGGAAGGATCGCTTCGCCCTGGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGACGGCTCCAGC‑GACGCATGACCGTTTCTTTGGTGAAAAGACCCACCCGAGCGCAGAAATGGGCATGGGGTTCAGCATCATCGATTCCGGCTGGACCCGCCCCAAGTACCCGCTATCCAGGCAGTCACAAGAGACCTTCATCCAGTATTC > NC_002947/42504‑42799 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |