New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 277249	87 (1.660)	5 (0.100)	5/232	NT	7.1%	intergenic (‑82/+15)	PP_0223/PP_0224	DszC family monooxygenase/DszC family monooxygenase
	?	NC_002947	= 5538647	48 (0.970)					intergenic (+89/+32)	PP_4871/PP_4872	lysine decarboxylase family protein/hypothetical protein

TTGGGCATCGCTGGTGATGATATTTGTAGTCATGTTGTTCTCCGGGGCCATTGGGGCCGCTTTGCGGCACATCGCGACACAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/277096‑277249 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcccATCGCGACACAAGGCCGCTCCCCCATTGCCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGACCGCGAAGCGGTCCCAAAAGTCTCAGCTTCAGTCAGGCTGCTTGTCGACCCACTTAGGCGCGACCGGCGCCACAAAGCTGTC  <  NC_002947/5538647‑5538505                                                                                                                                                                                                                                                                                                           TTGGGCATCGCTGGTGATGATATTTGTAGTCATGTTGTTCTCCGGGGCCATTGGGGCCGCTTTGCGGCACATCGCGACACAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCA                                                                                                                                                     <  1:882430/150‑1        TCGCTGGTGATGATATTTGTAGTCATGTTGTTCTCCGGGGCCATTGGGGCCGCTTTGCGGCACATCGCGACACAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCTTTGCAGCCCATC                                                                                                                                              <  1:481519/150‑1        TCGCTGGTGATGATATTTGTAGTCATGTTGTTCTCCGGGGCCATTGGGGCCGCTTTGCGGCACATCGCGACACAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCCGGCTTGTGTCGCGATGGGCTGCTTTGCAGCCCATC                                                                                                                                              <  1:1182654/150‑1                                                                                                                            CCTTGTGTCGCGATGGGCTGCAAAGCAGCCCATCGCGACACAAGGCCGCTCCCCCATTGCCTTTGTGGGAGCG                                                                                                       <  1:1266217/73‑1                                                                                                                            CCTTGTGTCGCGATGGGCTGCAAAGCAGCCCATCGCGACACAAGGCCGCTCCCCCATTGCCTTTGTGGGAGCG                                                                                                       >  2:1266217/1‑73                                                                                                                                       GATGGGCTGCAAAGCAGCCCATCGCGACACAAGGCCGCTCCCCCATTGCCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGACCGCGAAGCGGTCCCAAAAGTCTCAGCTTCAGTCAGGCTGCTTGTCGACCCACTTAGGCGCGACCGGCG               >  1:651328/1‑150                                                                                                                                        ATGGGCTGCAAAGCAGCCCATCGCGACACAAGGCCGCTCCCCCATTGCCTTTGTGGGAG                                                                                                         >  1:1353140/1‑59                                                                                                                                        ATGGGCTGCAAAGCAGCCCATCGCGACACAAGGCCGCTCCCCCATTGCCTTTGTGGGAG                                                                                                         <  2:1353140/59‑1                                                                                                                                                    GCAGCCCATCGCAACACAAGGCCGCTCCCCCATTGCCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGACCGCGAAGCGGTCCCAAAAGTCTCAGCTTCAGTCAGGCTGCTTGTCGACCCACTTAGGCGCGACCGGCGCCACAAAGCTGTC  <  1:294991/150‑1                                                                                                                                                                                                                                                                                                           TTGGGCATCGCTGGTGATGATATTTGTAGTCATGTTGTTCTCCGGGGCCATTGGGGCCGCTTTGCGGCACATCGCGACACAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/277096‑277249 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcccATCGCGACACAAGGCCGCTCCCCCATTGCCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGACCGCGAAGCGGTCCCAAAAGTCTCAGCTTCAGTCAGGCTGCTTGTCGACCCACTTAGGCGCGACCGGCGCCACAAAGCTGTC  <  NC_002947/5538647‑5538505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.