New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	561384 =	60 (1.140)	4 (0.080)	4/224	NT	7.0%	intergenic (+18/‑49)	rpmJ/PP_mr09	50S ribosomal protein L36/Alpha_RBS regulatory region
	?	NC_002947	561412 =	51 (1.070)					intergenic (+46/‑21)	rpmJ/PP_mr09	50S ribosomal protein L36/Alpha_RBS regulatory region

TATGCTTGTTATCTGGAATGTTGACGCCTGCAATACGGGCCATTCAGTGGGACTCCAATTGACAGCTACCTACGCCCCGGAAGCCAAGAAATAGGGCGCGAGATAATATCGCTGTAGAAACGAATAATCAACCCAGCAGCACACT‑AGCTGCTGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/561540‑561384 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgctgggttGATTATTCGTTTCTACAGCGATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCTGTCAATTGGAGTCCCACTGAATGGCCCGTATTGCAGGCGTCAACATTCCAGATA  >  NC_002947/561412‑561531                                                                                                                                                                                                                                                                                        TATGCTTGTTATCTGGAATGTTGACGCCTGCAATACGGGCCATTCAGTGGGACTCCAATTGACAGCTACCTACGCCCCGGAAGCCAAGAAATAGGGCGCGAGATAATATCGCTGTAGAAACGAATAATCAACCCAGCAGCACACT‑AGCTG                                                                                                                                 >  2:422025/1‑150    GCTTGTTATCTGGAATGTTGACGCCTGCAATACGGGCCATTCAGTGGGACTCCAATTGACAGCTACCTACGCCCCGGAAGCCAAGAAATAGGGCGCGAGATAATATCGCTGTAGAAACGAATAATCAACCCAGCAGCACACT‑AGCTGCTG                                                                                                                              >  1:294910/1‑150      TTGTTATCTGGAATGTTGACGCCTGCAATACGGGCCATTCAGTGGGACTCCAATTGACAGCTACCTACGCCCCGGAAGCCAAGAAATAGGGCGCGAGATAATATCGCTGTAGAAACGAATAATCAACCCAGCAGCACACT‑AGCTGCTGGG                                                                                                                            >  2:358752/1‑150        GTTATCTGGAATGTTGACGCCTGCAATACGGGCCATTCAGTGGGACTCCAATTGACAGCTACCTACGCCCCGGAAGCCAAGAAATAGGGCGCGAGATAATATCGCTGTAGAAACGAATAATCAACCCAGCAGCACACT‑AGCTGCTGGGTT                                                                                                                          >  1:1010968/1‑150                                      GGCCATTCAGTGGGACTCCAATTGACAGCTACCTACGCCCCGGAAGCCAAGAAATAGGGCGCGAGATAATATCGCTGTAGAAACGAATAATCAACCCAGCAGCTAGTG‑TGCTGCTCGGTTGATTATTCGTTTCTACAGCGATAGGATCTC                                                                                            <  2:1235918/150‑1                                                      TCCAATTGACAGCTACCTACGCCCCGGAAGCCAAGAAATAGGGCGCGAGATAATATCGCTGTAGAAACGAATAATCAACCCAGCAGCTAGTG‑TGCTGCTGGGTTGATTATTCGTTT                                                                                                              <  1:903020/116‑1                                                      TCCAATTGACAGCTACCTACGCCCCGGAAGCCAAGAAATAGGGCGCGAGATAATATCGCTGTAGAAACGAATAATCAACCCAGCAGC‑TAGTGTGCTGCTGGGTTGATTATTCGTTT                                                                                                              >  2:903020/1‑116                                                                                                                                TCAACCCAGCAGCACACT‑AGCTGCTGGGTTGATTATTCGTTTCTACAGCGATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCTGTCAATTGGAGTCCCACTGAATGGCCCGTATTGCAGGCGTCAACATTCCAGATA  >  1:1084212/1‑150                                                                                                                                                                                                                                                                                        TATGCTTGTTATCTGGAATGTTGACGCCTGCAATACGGGCCATTCAGTGGGACTCCAATTGACAGCTACCTACGCCCCGGAAGCCAAGAAATAGGGCGCGAGATAATATCGCTGTAGAAACGAATAATCAACCCAGCAGCACACT‑AGCTGCTGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/561540‑561384 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgctgggttGATTATTCGTTTCTACAGCGATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCTGTCAATTGGAGTCCCACTGAATGGCCCGTATTGCAGGCGTCAACATTCCAGATA  >  NC_002947/561412‑561531

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.