New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	623084 =	24 (0.460)	5 (0.100)	4/230	NT	18.4%	intergenic (+33/+129)	PP_0535/PP_0536	ferric siderophore receptor/hypothetical protein
	?	NC_002947	623115 =	22 (0.450)					intergenic (+64/+98)	PP_0535/PP_0536	ferric siderophore receptor/hypothetical protein

AATGGCACTCGGAGACTTCTTGAATTAAAACCAAGCGCCTGATTAACACTTACTCTCACAACTTTATTGCACTGATACCCGATAGTGCAGATACACTTCTAGATTTCTCATGATTCAGCATCAAGGCCGCGCCCTTTGCAGGCACGGCCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/623235‑623084 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccttgATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTTGTGAGAGTAAGTGTTAATCAGGCGCTTGGTTTTAATTCAAGAAGTCTCCGAGTGCCATTGATGCTTTATTTCTTGCCATTGGGTG  >  NC_002947/623115‑623261                                                                                                                                                                                                                                                                                                             AATGGCACTCGGAGACTTCTTGAATTAAAACCAAGCGCCTGATTAACACTTACTCTCACAACTTTATTGCACTGATACCCGATAGTGCAGATACACTTCTAGATTTCTCATGATTCAGCATCAAGGCCGCGCCCTTTGCAGGCACGGCCT                                                                                                                                                       <  1:1388540/150‑1  ATGGCACTCGGAGACTTCTTGAATTAAAACCAAGCGCCTGATTAACACTTACTCTCACAACTTTATTGCACTGATACCCGATAGTGCAGATACACTTCTAGATTTCTCATGATTCAGCATCAAGGCCGCGCCCTTTGCAGGCACGGCCTT                                                                                                                                                      <  2:1062034/150‑1                                                                                                                   TCAGCATCAAGGCCGCGCCCTTTGCAGGCACGGCCTTGATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTTGTGAGAGTAAGTGTTAATCAGGCGCTTGGTTTTAATTCAAGAAGTCTCCG                                     >  2:850963/1‑150                                                                                                                        ATCAAGGCCGCGCCCTTTGCAGGCACGGCCTTGATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTTGTGAGAGTAAGTGTTAA                                                                      <  1:355532/112‑1                                                                                                                        ATCAAGGCCGCGCCCTTTGCAGGCACGGCCTTGATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTTGTGAGAGTAAGTGTTAA                                                                      >  2:355532/1‑112                                                                                                                        ATCAAGGCCGCGCCCTTTGCAGGCACGGCCTTGATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAA                                                                                              >  1:55831/1‑88                                                                                                                        ATCAAGGCCGCGCCCTTTGCAGGCACGGCCTTGATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAA                                                                                              <  2:55831/88‑1                                                                                                                                                      TTGATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTTGTGAGAGTAAGTGTTAATCAGGCGCTTGGTTTTAATTCAAGAAGTCTCCGAGTGCCATTGATGCTTTATTTCTTGCCATTGGGTG  >  2:1270490/1‑150                                                                                                                                                      TTGATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTTGTGAGAGTAAGTGTTAATCAGGCGCTTGGTTTTAATTCAAGAAGTCTCCGA                                    >  1:1006164/1‑116                                                                                                                                                      TTGATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTTGTGAGAGTAAGTGTTAATCAGGCGCTTGGTTTTAATTCAAGAAGTCTCCGA                                    <  2:1006164/116‑1                                                                                                                                                                                                                                                                                                             AATGGCACTCGGAGACTTCTTGAATTAAAACCAAGCGCCTGATTAACACTTACTCTCACAACTTTATTGCACTGATACCCGATAGTGCAGATACACTTCTAGATTTCTCATGATTCAGCATCAAGGCCGCGCCCTTTGCAGGCACGGCCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/623235‑623084 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccttgATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTTGTGAGAGTAAGTGTTAATCAGGCGCTTGGTTTTAATTCAAGAAGTCTCCGAGTGCCATTGATGCTTTATTTCTTGCCATTGGGTG  >  NC_002947/623115‑623261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.