| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 623084 = | 24 (0.460) | 5 (0.100) | 4/230 | NT | 18.4% | intergenic (+33/+129) | PP_0535/PP_0536 | ferric siderophore receptor/hypothetical protein |
| ? | NC_002947 | 623115 = | 22 (0.450) | intergenic (+64/+98) | PP_0535/PP_0536 | ferric siderophore receptor/hypothetical protein | |||||
CCTGTCGCGGGTGGGCTCGACCTCCACGTTCAACTTCTACGGGCCGTCGCGCAGCATGATGGTTGGAGCGCGGTATGACTTCTGACGGGGTCTGTTGCCGCTAGGTGCACCGCGACACAAGGCCGTGCCTGCAAAGGGCGCGGCCTTGATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTTGTGAGAGTAAGTGTTAATCAGGCGCTTGGTTTTAATTCAAGAAGTCTCCGAGTGCCATTGATGCTTTATTTCTTGCCATTGGGTG > NC_002947/622967‑623261 | ccTGTCGCGGGTGGGCTCGACCTCCACGTTCAACTTCTACGGGCCGTCGCGCAGCATGATGGTTGGAGCGCGGTATGACTTCTGCCGGGGTCTGTTGCCGCTAGGTGCACCGCGACACAAGGCCGTGCCTGCAAAGGGCGCGGCCTTGAt < 2:1022610/150‑1 (MQ=255) cggagacttcttgaattaaaaccaagcgcctgattaacacttactctcacaactttattgcactgatacccgatagtgcagatacacttctagatttctcatgattcagcatCAAGGCCGTGCCTGCAAAGGGCGCGGCCTTGATGCTGa > 2:850963‑M1/113‑150 (MQ=255) gggCTCGACCTCCACGTTCAACTTCTACGGGCCGTCGCGCAGCATGATGGTTGGAGCGCGGTATGACTTCTGACGGGGTCTGTTGCCGCTAGGTGCACCGCGACACAAGGCCGTGCCTGCAAAGGGCGCGGCCTTGATGCTGAATCATga < 1:441881/150‑1 (MQ=255) gggCTCGACCTCCACGTTCAACTTCTACGGGCCGTAGTAATACATGATGGTTGGAGCGCGGTATGACTTCTGACGGGGTCTGTTGCCGCTAGGTGCACCGCGACACAAGGCCGTGCCTGCAAAGGGCGCGGCCTTGATGCTGAATCATga < 1:14057/150‑1 (MQ=255) gCTCGACCTCCACGTTCAACTTCTACGGGCCGTCGCGCAGCATGATGGTTGGAGCGCGGTATGACTTCTGACGGGGTCTGTTGCCGCTAGGTGCACCGCGACACAAGGCCGTGCCTGCAAAGGGCGCGGCCTTGATGCTGAATCATgaga > 1:1023853/1‑150 (MQ=255) cTCGACCTCCACGTTCAACTTCTACGGGCCGTCGCGCAGCATGATGGTTGGAGCGCGGTATGACTTCTGACGGGGTCTGTTGCCGCTAGGTGCACCGCGACACAAGGCCGTGCCTGCAAAGGGCGCGGCCTTGATGCTGAATCATGAGaa > 2:858951/1‑150 (MQ=255) ttaacacttactctcacaactttattgcactgatacccgatagtgcagatacacttctagatttctcatgattcagcatCAAGGCCGTGCCTGCAAAGGGCGCGGCCTTGAt < 1:355532‑M1/33‑1 (MQ=255) ttaacacttactctcacaactttattgcactgatacccgatagtgcagatacacttctagatttctcatgattcagcatCAAGGCCGTGCCTGCAAAGGGCGCGGCCTTGAt > 2:355532‑M1/80‑112 (MQ=255) gTCGCGCAGCATGATGGTTGGAGCGCGGTATGCCTTCTGACGGGGTCTGTTGCCGCTAGGTGCACCGCGACACAAGGCCGTGCCTGCAAAGGGCGCGGCCTTGATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTAt < 1:1216321/150‑1 (MQ=255) cgcAGCATGATGGTTGGAGCGCGGTATGACTTCTGACGGGGTCTGTTGCCGCTAGGTGCACCGCGACACAAGGCCGTGCCTGCAAAGGGCGCGGCCTTGATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGt < 2:1023853/150‑1 (MQ=255) gTTGGAGCGCGGTATGACTTCTGACGGGGTCTGTTGCCGCTAGGTGCACCGCGACACAAGGCCGTGCCTGCAAAGGGCGCGGCCTTGATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTtg > 2:1064051/1‑150 (MQ=255) ttgcactgatacccgatagtgcagatacacttctagatttctcatgattcagcatCAAGGCCGTGCCTGCAAAGGGCGCGGCCTTGAt > 1:55831‑M1/56‑88 (MQ=255) ttgcactgatacccgatagtgcagatacacttctagatttctcatgattcagcatCAAGGCCGTGCCTGCAAAGGGCGCGGCCTTGAt < 2:55831‑M1/33‑1 (MQ=255) ttGGAGCGCGGTATGACTTCTGACGGGGTCTGTTGCCGCTAGGTGCACCGCGACACAAGGCCGTGCCTGCAAAGGGCGCGGCCTTGATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTtgt < 1:1064051/150‑1 (MQ=255) ttCTGACGGGGTCTGTTGCCGCTAGGTGCACCGCGACACAAGGCCGTGCCTGCAAAGGGCGCGGCCTTGATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTTGTGAGAGTAAGTGTTAATc > 2:132956/1‑150 (MQ=255) cTGACGGGGTCTGTTGCCGCTAGGTGCACCGCGACACAAGGCCGTGCCTGCAAAGGGCGCGGCCTTGATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTTGTGAGAGTAAGTGTTAATCAg > 1:799407/1‑150 (MQ=255) gTCTGTTGCCGCTAGGTGCACCGCGACACAAGGCCGTGCCTGCAAAGGGCGCGGCCTTGATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTTGTGAGAGTAAGTGTTAATCAGGCGCTTgg < 1:132956/150‑1 (MQ=255) cTAGGTGCACCGCGACACAAGGCCGTGCCTGCAAAGGGCGCGGCCTTGATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTTGTGAGAGTAAGTGTTAATCAGGCGCTTGGTTTTAATTCaa > 2:197528/1‑150 (MQ=255) cACCGCGACACAAGGCCGTGCCTGCAAAGGGCGCGGCCTTGATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTTGTGAGAGTAAGTGTTAATCAGGCGCTTGGTTTTAATTCAAGAAGtct < 2:905493/150‑1 (MQ=255) tcagcatcaaggccgcgccctttgcaggcacggccttgATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTTGTGAGAGTAAGTGTTAATCAGGCGCTTGGTTTTAATTCAAGAAGTCTCCg > 2:850963‑M2/39‑150 (MQ=255) atcaaggccgcgccctttgcaggcacggccttgATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCaa > 1:55831‑M2/34‑88 (MQ=255) atcaaggccgcgccctttgcaggcacggccttgATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCaa < 2:55831‑M2/55‑1 (MQ=255) atcaaggccgcgccctttgcaggcacggccttgATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTTGTGAGAGTAAGTGTTaa > 2:355532‑M2/34‑112 (MQ=255) atcaaggccgcgccctttgcaggcacggccttgATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTTGTGAGAGTAAGTGTTaa < 1:355532‑M2/79‑1 (MQ=255) AAGGCCGTGCCTGCAAAGGGCGCGGCCTTGATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTTGTGAGAGTAAGTGTTAATCAGGCGCTTGGTTTTAATTCAAGAAGTCTCCGAGTGCCAt < 2:1062034‑M1/150‑1 (MQ=255) AGGCCGTGCCTGCAAAGGGCGCGGCCTTGATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTTGTGAGAGTAAGTGTTAATCAGGCGCTTGGTTTTAATTCAAGAAGTCTCCGAGTGCCAtt < 1:1388540‑M1/150‑1 (MQ=255) tGCCTGCAAAGGGCGCGGCCTTGATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTTGTGAGAGTAAGTGTTAATCAGGCGCTTGGTTTTAATTCAAGAAGTCTCCGAGTGCCATTGATGCt < 1:858951/150‑1 (MQ=255) gCCTGCAAAGGGCGCGGCCTTGATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTTGTGAGAGTAAGTGTTAATCAGGCGCTTGGTTTTAATTCAAGAAGTCTCCGAGTGCCATTGATGCtt < 1:1062034/150‑1 (MQ=255) cTGCAAAGGGCGCGGCCTTGATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTTGTGAGAGTAAGTGTTAATCAgg > 2:126292/1‑104 (MQ=255) cTGCAAAGGGCGCGGCCTTGATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTTGTGAGAGTAAGTGTTAATCAgg > 2:126341/1‑104 (MQ=255) cTGCAAAGGGCGCGGCCTTGATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTTGTGAGAGTAAGTGTTAATCAgg < 1:126341/104‑1 (MQ=255) cTGCAAAGGGCGCGGCCTTGATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTTGTGAGAGTAAGTGTTAATCAgg < 1:126292/104‑1 (MQ=255) cTGCAAAGGGCGCGGCCTTGATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTTGTGAGAGTAAGTGTTAATCAGGCGCTTGGTTTTAATTCAAGAAGTCTCCGAGTGCCATTGATGCTTTa > 2:1215676/1‑150 (MQ=255) gCAAAGGGCGCGGCCTTGATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTtg < 2:1101735/81‑1 (MQ=255) gCAAAGGGCGCGGCCTTGATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTtg > 1:1101735/1‑81 (MQ=255) ttgATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTTGTGAGAGTAAGTGTTAATCAGGCGCTTGGTTTTAATTCAAGAAGTCTCCGa < 2:1006164‑M2/113‑1 (MQ=255) ttgATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTTGTGAGAGTAAGTGTTAATCAGGCGCTTGGTTTTAATTCAAGAAGTCTCCGa > 1:1006164‑M2/4‑116 (MQ=255) ttgATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTTGTGAGAGTAAGTGTTAATCAGGCGCTTGGTTTTAATTCAAGAAGTCTCCGAGTGCCATTGATGCTTTATTTCTTGCCATTGGgtg > 2:1270490‑M2/4‑150 (MQ=255) | CCTGTCGCGGGTGGGCTCGACCTCCACGTTCAACTTCTACGGGCCGTCGCGCAGCATGATGGTTGGAGCGCGGTATGACTTCTGACGGGGTCTGTTGCCGCTAGGTGCACCGCGACACAAGGCCGTGCCTGCAAAGGGCGCGGCCTTGATGCTGAATCATGAGAAATCTAGAAGTGTATCTGCACTATCGGGTATCAGTGCAATAAAGTTGTGAGAGTAAGTGTTAATCAGGCGCTTGGTTTTAATTCAAGAAGTCTCCGAGTGCCATTGATGCTTTATTTCTTGCCATTGGGTG > NC_002947/622967‑623261 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |